RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SFT2D1Q8WV19 159 aa9.23□□□□□ -0.93
LINC00339-202ENST00000416769 MAP1LC3BQ9GZQ8 125 aa9.23□□□□□ -0.93
LINC00339-202ENST00000416769 TMEM167BQ9NRX6 74 aa9.23□□□□□ -0.93
LINC00339-202ENST00000416769 TEX46H3BTG2 121 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 SOCS3O14543 225 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 HBE1P02100 147 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 OR10J4P0C629 311 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 ID1P41134 155 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 PSMG4Q5JS54 123 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 LYPD1Q8N2G4 141 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 SLC50A1Q9BRV3 221 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 XCL2Q9UBD3 114 aa9.22□□□□□ -0.93
LINC00339-202ENST00000416769 LRP1BQ9NZR2 4599 aa9.21□□□□□ -0.93
LINC00339-202ENST00000416769 ISLRO14498 428 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 SNRPCP09234 159 aaKnown RBP9.21□□□□□ -0.94
LINC00339-202ENST00000416769 PSMB3P49720 205 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 FGF8P55075 233 aaPredicted RBP9.21□□□□□ -0.94
LINC00339-202ENST00000416769 FXYD7P58549 80 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 UBE2L3P68036 154 aaKnown RBP9.21□□□□□ -0.94
LINC00339-202ENST00000416769 PSG9Q00887 426 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 IFITM2Q01629 132 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 BLNKQ8WV28 456 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 C16orf92Q96LL3 132 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 TMPRSS5Q9H3S3 457 aa9.21□□□□□ -0.94
LINC00339-202ENST00000416769 ZNF331Q9NQX6 463 aaPredicted RBP9.21□□□□□ -0.94
LINC00339-202ENST00000416769 TRAV8-2A0A0B4J237 113 aa9.2□□□□□ -0.94
LINC00339-202ENST00000416769 NDUFB4O95168 129 aa9.2□□□□□ -0.94
LINC00339-202ENST00000416769 EMP1P54849 157 aa9.2□□□□□ -0.94
LINC00339-202ENST00000416769 SNRPD3P62318 126 aaKnown RBP9.2□□□□□ -0.94
LINC00339-202ENST00000416769 GDF5OSQ5U4N7 250 aa9.2□□□□□ -0.94
LINC00339-202ENST00000416769 MORN3Q6PF18 240 aaPredicted RBP9.2□□□□□ -0.94
LINC00339-202ENST00000416769 LYPD6BQ8NI32 183 aa9.2□□□□□ -0.94
LINC00339-202ENST00000416769 A0A1W2PRE2 83 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 H3BTX0 84 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 PPT1P50897 306 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 RANP62826 216 aaKnown RBP9.19□□□□□ -0.94
LINC00339-202ENST00000416769 PSG3Q16557 428 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 Q6ZR54 194 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 IQCF2Q8IXL9 164 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 NDUFAF3Q9BU61 184 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 PRELID1Q9Y255 219 aa9.19□□□□□ -0.94
LINC00339-202ENST00000416769 SLC17A3O00476 420 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 IGKV3-20P01619 116 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 P0DMU3 169 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 FAM231AP0DMU4 169 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 FAM231CP0DMU5 169 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 CCL20P78556 96 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 NKX6-2Q9C056 277 aaPredicted RBP9.18□□□□□ -0.94
LINC00339-202ENST00000416769 AAMDCQ9H7C9 122 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 ARL2-SNX15V9GYD0 113 aa9.18□□□□□ -0.94
LINC00339-202ENST00000416769 IGHV3OR16-12A0A075B7B8 117 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 A0A1B0GV50 99 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 PGPA6NDG6 321 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 H3BMM0 161 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 LGALS9BQ3B8N2 356 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 IGFL4Q6B9Z1 124 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 EXOC3-AS1Q8N2X6 119 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 ARL6IP6Q8N6S5 226 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 MRPL53Q96EL3 112 aaKnown RBP9.17□□□□□ -0.94
LINC00339-202ENST00000416769 C20orf173Q96LM9 149 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 LINC00052Q96N35 136 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 Q9H3A6 140 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 OTORQ9NRC9 128 aa9.17□□□□□ -0.94
LINC00339-202ENST00000416769 FAM74A7A6NL05 159 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 NMBP08949 121 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 HTN3P15516 51 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 RAB14P61106 215 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 SUMO1P63165 101 aaKnown RBP9.16□□□□□ -0.94
LINC00339-202ENST00000416769 ICAM4Q14773 271 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 ZNF705AQ6ZN79 300 aaPredicted RBP9.16□□□□□ -0.94
LINC00339-202ENST00000416769 RXFP4Q8TDU9 374 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 MANBALQ9NQG1 85 aa9.16□□□□□ -0.94
LINC00339-202ENST00000416769 APOBP04114 4563 aaKnown RBP9.15□□□□□ -0.94
LINC00339-202ENST00000416769 PAGE4O60829 102 aa9.15□□□□□ -0.94
LINC00339-202ENST00000416769 UBE2G2P60604 165 aa9.15□□□□□ -0.94
LINC00339-202ENST00000416769 UBE2DNLQ8IWF7 75 aa9.15□□□□□ -0.94
LINC00339-202ENST00000416769 RNF182Q8N6D2 247 aa9.15□□□□□ -0.94
LINC00339-202ENST00000416769 TXNDC17Q9BRA2 123 aa9.15□□□□□ -0.94
LINC00339-202ENST00000416769 ZNF705FA8MVS1 300 aaPredicted RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 RGS13O14921 159 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 IFNA1P01562 189 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 PRM2P04554 102 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 ZNF705DP0CH99 300 aaPredicted RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 ZNF705BP0CI00 300 aaPredicted RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 TAGLN2P37802 199 aaKnown RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 CSN1S1P47710 185 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 TNP2Q05952 138 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 CLLU1Q5K131 121 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 FAM222AQ5U5X8 452 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 FOXI2Q6ZQN5 318 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 CCDC28AQ8IWP9 274 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 ZNF738Q8NE65 137 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 PCNPQ8WW12 178 aaKnown RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 RPUSD4Q96CM3 377 aaKnown RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 GNG13Q9P2W3 67 aa9.14□□□□□ -0.95
LINC00339-202ENST00000416769 YTHDF2Q9Y5A9 579 aaKnown RBP9.14□□□□□ -0.95
LINC00339-202ENST00000416769 F6UB75 175 aa9.13□□□□□ -0.95
LINC00339-202ENST00000416769 M0R3E3 92 aa9.13□□□□□ -0.95
LINC00339-202ENST00000416769 SLC25A5P05141 298 aaKnown RBP9.13□□□□□ -0.95
LINC00339-202ENST00000416769 HLA-DRB4P13762 266 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms