RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SCGB1C1Q8TD33 95 aa13.41□□□□□ -0.26
SF3A1-202ENST00000411423 FAM210BQ96KR6 192 aa13.41□□□□□ -0.26
SF3A1-202ENST00000411423 HECTD4Q9Y4D8 3996 aa13.41□□□□□ -0.26
SF3A1-202ENST00000411423 OR7C2O60412 319 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 ZNF324O75467 553 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-202ENST00000411423 P0DMU3 169 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 FAM231AP0DMU4 169 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 FAM231CP0DMU5 169 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 C9orf47Q6ZRZ4 202 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 MED28Q9H204 178 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 AAMDCQ9H7C9 122 aa13.4□□□□□ -0.26
SF3A1-202ENST00000411423 TIMM8BQ9Y5J9 83 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-202ENST00000411423 C7orf71A4D174 169 aa13.39□□□□□ -0.27
SF3A1-202ENST00000411423 RAB2AP61019 212 aa13.39□□□□□ -0.27
SF3A1-202ENST00000411423 ZNF493Q6ZR52 646 aa13.39□□□□□ -0.27
SF3A1-202ENST00000411423 ZFAND2AQ8N6M9 145 aa13.39□□□□□ -0.27
SF3A1-202ENST00000411423 LINC00612Q8N6U2 182 aa13.39□□□□□ -0.27
SF3A1-202ENST00000411423 LINC00477Q96M19 166 aa13.39□□□□□ -0.27
SF3A1-202ENST00000411423 SLC25A5P05141 298 aaKnown RBP13.38□□□□□ -0.27
SF3A1-202ENST00000411423 CRISP2P16562 243 aa13.38□□□□□ -0.27
SF3A1-202ENST00000411423 RANP62826 216 aaKnown RBP13.38□□□□□ -0.27
SF3A1-202ENST00000411423 UBE2L3P68036 154 aaKnown RBP13.38□□□□□ -0.27
SF3A1-202ENST00000411423 Q8TAT8 98 aa13.38□□□□□ -0.27
SF3A1-202ENST00000411423 Q9H3A6 140 aa13.38□□□□□ -0.27
SF3A1-202ENST00000411423 ZNF492Q9P255 531 aa13.38□□□□□ -0.27
SF3A1-202ENST00000411423 CBY3A6NI87 242 aa13.37□□□□□ -0.27
SF3A1-202ENST00000411423 F5H768 121 aa13.37□□□□□ -0.27
SF3A1-202ENST00000411423 C11orf72Q8NBR9 251 aa13.37□□□□□ -0.27
SF3A1-202ENST00000411423 AQP10Q96PS8 301 aa13.37□□□□□ -0.27
SF3A1-202ENST00000411423 HMGB3O15347 200 aaKnown RBP13.36□□□□□ -0.27
SF3A1-202ENST00000411423 ATP5G1P05496 136 aa13.36□□□□□ -0.27
SF3A1-202ENST00000411423 M6PRP20645 277 aa13.36□□□□□ -0.27
SF3A1-202ENST00000411423 RNASE4P34096 147 aaKnown RBP13.36□□□□□ -0.27
SF3A1-202ENST00000411423 ATP5G3P48201 142 aa13.36□□□□□ -0.27
SF3A1-202ENST00000411423 KHDC3LQ587J8 217 aa13.36□□□□□ -0.27
SF3A1-202ENST00000411423 PYGO2Q9BRQ0 406 aa13.36□□□□□ -0.27
SF3A1-202ENST00000411423 GAGE12BA1L429 117 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 G3V3Q6 166 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 M0R2N4 97 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 GAGE7O76087 117 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 GIPP09681 153 aaPredicted RBP13.35□□□□□ -0.27
SF3A1-202ENST00000411423 GAGE12FP0CL80 117 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 GAGE12GP0CL81 117 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 GAGE12IP0CL82 117 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 TMEM78Q5T7P6 136 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 CCDC28AQ8IWP9 274 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 HSD17B11Q8NBQ5 300 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 TP53TG3Q9ULZ0 132 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 NACAE9PAV3 2078 aa13.35□□□□□ -0.27
SF3A1-202ENST00000411423 RNF222A6NCQ9 220 aa13.34□□□□□ -0.27
SF3A1-202ENST00000411423 HOXA5P20719 270 aa13.34□□□□□ -0.27
SF3A1-202ENST00000411423 ACOT6Q3I5F7 207 aaPredicted RBP13.34□□□□□ -0.27
SF3A1-202ENST00000411423 LYPD1Q8N2G4 141 aa13.34□□□□□ -0.27
SF3A1-202ENST00000411423 LINC00467Q9BRT7 94 aa13.34□□□□□ -0.27
SF3A1-202ENST00000411423 GSN-AS1Q9NRJ2 163 aa13.34□□□□□ -0.27
SF3A1-202ENST00000411423 IGLV2-18A0A075B6J9 118 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 DIRC3C9JPN6 131 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 GPX1P07203 203 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 ATP6V0CP27449 155 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 ZNF138P52744 262 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 TAS2R45P59539 299 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 Q6ZTI0 123 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 OR10G4Q8NGN3 311 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 OR10G9Q8NGN4 311 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 OR10G7Q8NGN6 311 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 SH3BGRL3Q9H299 93 aa13.33□□□□□ -0.28
SF3A1-202ENST00000411423 UBE2DNLQ8IWF7 75 aa13.32□□□□□ -0.28
SF3A1-202ENST00000411423 C15orf53Q8NAA6 179 aa13.32□□□□□ -0.28
SF3A1-202ENST00000411423 KLF12Q9Y4X4 402 aa13.32□□□□□ -0.28
SF3A1-202ENST00000411423 RBAKDNA6NC62 111 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 SNURFLB1AK76 121 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 NMBP08949 121 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 DAZ2Q13117 558 aaKnown RBP13.31□□□□□ -0.28
SF3A1-202ENST00000411423 ANXA2RQ3ZCQ2 193 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 EIF4E3Q8N5X7 224 aaKnown RBP13.31□□□□□ -0.28
SF3A1-202ENST00000411423 OR2G3Q8NGZ4 309 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 HYLS1Q96M11 299 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 TMPRSS5Q9H3S3 457 aa13.31□□□□□ -0.28
SF3A1-202ENST00000411423 DYNC1H1Q14204 4646 aaKnown RBP13.3□□□□□ -0.28
SF3A1-202ENST00000411423 A0A1W2PPV4 95 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 PGPA6NDG6 321 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 RTL8CO15255 209 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 NUDT3O95989 172 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 ZNF266Q14584 549 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 RGS21Q2M5E4 152 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 RNF212Q495C1 297 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 Q6ZR54 194 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 SSX7Q7RTT5 188 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 OTORQ9NRC9 128 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 TNFSF18Q9UNG2 199 aa13.3□□□□□ -0.28
SF3A1-202ENST00000411423 PKD1P98161 4303 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 FXYD6-FXYD2A0A087WZ82 144 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 ARL14EPLP0DKL9 152 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 CSN1S1P47710 185 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 CDC34P49427 236 aaPredicted RBP13.29□□□□□ -0.28
SF3A1-202ENST00000411423 GNG5P63218 68 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 LGALS9BQ3B8N2 356 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 RPL7L1Q6DKI1 246 aaKnown RBP13.29□□□□□ -0.28
SF3A1-202ENST00000411423 PQLC2Q6ZP29 291 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 PSMG3Q9BT73 122 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms