RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ZNF492Q9P255 531 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 A0A1W2PPQ1 181 aa10.59□□□□□ -0.71
GPNMB-203ENST00000409458 C19orf71A6NCJ1 209 aa10.59□□□□□ -0.71
GPNMB-203ENST00000409458 FBLL1A6NHQ2 334 aaKnown RBP10.59□□□□□ -0.71
GPNMB-203ENST00000409458 ZNF705GA8MUZ8 300 aaPredicted RBP10.59□□□□□ -0.71
GPNMB-203ENST00000409458 CA1P00915 261 aaPredicted RBP10.59□□□□□ -0.71
GPNMB-203ENST00000409458 CSN3P07498 182 aa10.59□□□□□ -0.71
GPNMB-203ENST00000409458 FAM3BP58499 235 aaPredicted RBP10.59□□□□□ -0.71
GPNMB-203ENST00000409458 KCNIP4Q6PIL6 250 aa10.59□□□□□ -0.71
GPNMB-203ENST00000409458 WFDC3Q8IUB2 231 aa10.59□□□□□ -0.71
GPNMB-203ENST00000409458 GPR61Q9BZJ8 451 aa10.59□□□□□ -0.71
GPNMB-203ENST00000409458 TRBV24-1A0A075B6N3 115 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 GATCO43716 136 aaKnown RBP10.58□□□□□ -0.72
GPNMB-203ENST00000409458 TFPI2P48307 235 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 DEFB1P60022 68 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 FOXL1Q12952 345 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 FAM210BQ96KR6 192 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 PRR25Q96S07 402 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 PYGO2Q9BRQ0 406 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 BIN3Q9NQY0 253 aa10.58□□□□□ -0.72
GPNMB-203ENST00000409458 ZNF705DP0CH99 300 aaPredicted RBP10.57□□□□□ -0.72
GPNMB-203ENST00000409458 ZNF705BP0CI00 300 aaPredicted RBP10.57□□□□□ -0.72
GPNMB-203ENST00000409458 NSUN5P1Q3KNT7 163 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.57□□□□□ -0.72
GPNMB-203ENST00000409458 AGPAT4-IT1Q9H0P7 198 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 K7EQG2 157 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 CRIP1P50238 77 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 SAMD13Q5VXD3 122 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 C9orf47Q6ZRZ4 202 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 COX8CQ7Z4L0 72 aa10.57□□□□□ -0.72
GPNMB-203ENST00000409458 F6UB75 175 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 OVOL1O14753 267 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 P01737 135 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 ID1P41134 155 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 TCL1AP56279 114 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 SAPCD1Q5SSQ6 148 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 TMEM78Q5T7P6 136 aa10.56□□□□□ -0.72
GPNMB-203ENST00000409458 RPP21Q9H633 154 aaKnown RBP10.56□□□□□ -0.72
GPNMB-203ENST00000409458 SMIM27A0A1W2PRY6 76 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 NPIPB6E9PJ23 425 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 ZNF688P0C7X2 276 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 CT45A10P0DMU9 189 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 RPS10P46783 165 aaKnown RBP10.55□□□□□ -0.72
GPNMB-203ENST00000409458 ZNF138P52744 262 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 NDUFA11Q86Y39 141 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 DYNLRB2Q8TF09 96 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 DAZAP1Q96EP5 407 aaKnown RBP10.55□□□□□ -0.72
GPNMB-203ENST00000409458 NDFIP1Q9BT67 221 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 C2CD3Q4AC94 2353 aa10.55□□□□□ -0.72
GPNMB-203ENST00000409458 A0A1B0GUS0 222 aa10.54□□□□□ -0.72
GPNMB-203ENST00000409458 ZNF80P51504 273 aaPredicted RBP10.54□□□□□ -0.72
GPNMB-203ENST00000409458 TMEM61Q8N0U2 210 aa10.54□□□□□ -0.72
GPNMB-203ENST00000409458 SETD2Q9BYW2 2564 aaPredicted RBP10.54□□□□□ -0.72
GPNMB-203ENST00000409458 SH2D1AO60880 128 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 HIST1H1AQ02539 215 aaPredicted RBP10.53□□□□□ -0.72
GPNMB-203ENST00000409458 PSMG4Q5JS54 123 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 OR8A1Q8NGG7 326 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 OR10J6PQ8NGY7 276 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 TYMSP04818 313 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 RPL19P84098 196 aaKnown RBP10.53□□□□□ -0.72
GPNMB-203ENST00000409458 DEFB114Q30KQ6 69 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 SMUG1Q53HV7 270 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 CT83Q5H943 113 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 OR4B1Q8NGF8 309 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 TSKUQ8WUA8 353 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 PPP1R14DQ9NXH3 145 aa10.53□□□□□ -0.72
GPNMB-203ENST00000409458 TRAV9-1A0A075B6T8 112 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 SNRPD3P62318 126 aaKnown RBP10.52□□□□□ -0.73
GPNMB-203ENST00000409458 PAFAH1B2P68402 229 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 CD300EQ496F6 205 aaPredicted RBP10.52□□□□□ -0.73
GPNMB-203ENST00000409458 FAM162BQ5T6X4 162 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 GDF5OSQ5U4N7 250 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 RBPMS2Q6ZRY4 209 aaKnown RBP10.52□□□□□ -0.73
GPNMB-203ENST00000409458 ZFP82Q8N141 532 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 OR2D3Q8NGH3 330 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 NEU1Q99519 415 aa10.52□□□□□ -0.73
GPNMB-203ENST00000409458 GZMBP10144 247 aa10.51□□□□□ -0.73
GPNMB-203ENST00000409458 GTSF1Q8WW33 167 aa10.51□□□□□ -0.73
GPNMB-203ENST00000409458 BTF3L4Q96K17 158 aa10.51□□□□□ -0.73
GPNMB-203ENST00000409458 LINC00477Q96M19 166 aa10.51□□□□□ -0.73
GPNMB-203ENST00000409458 SRD5A3Q9H8P0 318 aa10.51□□□□□ -0.73
GPNMB-203ENST00000409458 TRAV2A0A0B4J234 112 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 IZUMO1RA6ND01 250 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 C1orf196B1AJZ1 125 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 SPINK4O60575 86 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 PRR9Q5T870 116 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 NUP35Q8NFH5 326 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 FAM19A4Q96LR4 140 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 SIGLEC8Q9NYZ4 499 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 LENEPQ9Y5L5 61 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 HIGD1CA8MV81 97 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 A8MWL6 223 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 TRGC2P03986 189 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 FRMD6-AS1P0C7T7 363 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 NAT8BQ9UHF3 227 aa10.5□□□□□ -0.73
GPNMB-203ENST00000409458 CD33P20138 364 aa10.49□□□□□ -0.73
GPNMB-203ENST00000409458 ZFAND2AQ8N6M9 145 aa10.49□□□□□ -0.73
GPNMB-203ENST00000409458 GFRA4Q9GZZ7 299 aa10.49□□□□□ -0.73
GPNMB-203ENST00000409458 A0A0J9YX75 114 aa10.48□□□□□ -0.73
GPNMB-203ENST00000409458 TMEM189A5PLL7 270 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms