RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 Q9H3A6 140 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 OTORQ9NRC9 128 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 HLA-DRB4X5D2U9 266 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 RBAKDNA6NC62 111 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 FAM74A7A6NL05 159 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 ZNF705EA8MWA4 302 aaPredicted RBP6.74□□□□□ -1.33
VPS53-203ENST00000401468 GGTLC3B5MD39 225 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 H3BMM0 161 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 H3BTX0 84 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 IFNA7P01567 189 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 SNRPCP09234 159 aaKnown RBP6.74□□□□□ -1.33
VPS53-203ENST00000401468 HLA-DMBP28068 263 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 PPT1P50897 306 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 TRPT1Q86TN4 253 aaKnown RBP6.74□□□□□ -1.33
VPS53-203ENST00000401468 APRG1Q8IVJ8 170 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 EXOC3-AS1Q8N2X6 119 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 BLNKQ8WV28 456 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 RPUSD4Q96CM3 377 aaKnown RBP6.74□□□□□ -1.33
VPS53-203ENST00000401468 TCEAL7Q9BRU2 100 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 TMPRSS5Q9H3S3 457 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 EDA2RQ9HAV5 297 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 PPP1R14DQ9NXH3 145 aa6.74□□□□□ -1.33
VPS53-203ENST00000401468 YTHDF2Q9Y5A9 579 aaKnown RBP6.74□□□□□ -1.33
VPS53-203ENST00000401468 PRAC2D3DTV9 90 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 M0R3E3 92 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 SLC25A5P05141 298 aaKnown RBP6.73□□□□□ -1.33
VPS53-203ENST00000401468 RANP62826 216 aaKnown RBP6.73□□□□□ -1.33
VPS53-203ENST00000401468 CCL20P78556 96 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 ICAM4Q14773 271 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 GDF5OSQ5U4N7 250 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 IGFL4Q6B9Z1 124 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 AMTNQ6UX39 209 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 C5orf17Q8NAS9 161 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 OR8A1Q8NGG7 326 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 SPATA25Q9BR10 227 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 AAMDCQ9H7C9 122 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 MANBALQ9NQG1 85 aa6.73□□□□□ -1.33
VPS53-203ENST00000401468 KIR2DL5BA0A0G2JN68 375 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 KIR2DL5BA0A0G2JPC4 375 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 SERTM2A0A1B0GWG4 89 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 PGPA6NDG6 321 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 ZNF705FA8MVS1 300 aaPredicted RBP6.72□□□□□ -1.33
VPS53-203ENST00000401468 TEX46H3BTG2 121 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 NDUFS6O75380 124 aaKnown RBP6.72□□□□□ -1.33
VPS53-203ENST00000401468 NMBP08949 121 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 C9orf47Q6ZRZ4 202 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 ZNF767PQ75MW2 155 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 KIR2DL5AQ8N109 375 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 ZNF738Q8NE65 137 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 KIR2DL5BQ8NHK3 375 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 RXFP4Q8TDU9 374 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 FAM19A4Q96LR4 140 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 LINC00052Q96N35 136 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 ODF3Q96PU9 254 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 TXNDC17Q9BRA2 123 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 KRTAP4-5Q9BYR2 181 aa6.72□□□□□ -1.33
VPS53-203ENST00000401468 TRBV7-9A0A0J9YWB2 115 aa6.71□□□□□ -1.34
VPS53-203ENST00000401468 DIRC3C9JPN6 131 aa6.71□□□□□ -1.34
VPS53-203ENST00000401468 F6UB75 175 aa6.71□□□□□ -1.34
VPS53-203ENST00000401468 DUSP14O95147 198 aaKnown RBP6.71□□□□□ -1.34
VPS53-203ENST00000401468 GIG44P09565 113 aaPredicted RBP6.71□□□□□ -1.34
VPS53-203ENST00000401468 TAGLN2P37802 199 aaKnown RBP6.71□□□□□ -1.34
VPS53-203ENST00000401468 DEFB1P60022 68 aa6.71□□□□□ -1.34
VPS53-203ENST00000401468 EBLN2Q6P2I7 272 aa6.71□□□□□ -1.34
VPS53-203ENST00000401468 EPDR1Q9UM22 224 aa6.71□□□□□ -1.34
VPS53-203ENST00000401468 LOC102724200A0A096LPH7 203 aaPredicted RBP6.7□□□□□ -1.34
VPS53-203ENST00000401468 LCE6AA0A183 80 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 KNCNA6PVL3 124 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 PAGE4O60829 102 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 IGLV2-11P01706 119 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 TCRAP04437 139 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 RPL35AP18077 110 aaKnown RBP6.7□□□□□ -1.34
VPS53-203ENST00000401468 CNN1P51911 297 aaKnown RBP6.7□□□□□ -1.34
VPS53-203ENST00000401468 SUMO1P63165 101 aaKnown RBP6.7□□□□□ -1.34
VPS53-203ENST00000401468 ACTL10Q5JWF8 245 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 MORN3Q6PF18 240 aaPredicted RBP6.7□□□□□ -1.34
VPS53-203ENST00000401468 STHQ8IWL8 128 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 HIST1H2BAQ96A08 127 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 LINC00477Q96M19 166 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 ATG101Q9BSB4 218 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 KLF12Q9Y4X4 402 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 LENEPQ9Y5L5 61 aa6.7□□□□□ -1.34
VPS53-203ENST00000401468 IGKV2-40A0A087WW87 121 aaPredicted RBP6.69□□□□□ -1.34
VPS53-203ENST00000401468 TRBV6-1A0A0K0K1D8 114 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 LOC102723971A0A1B0GUV8 181 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 FBLL1A6NHQ2 334 aaKnown RBP6.69□□□□□ -1.34
VPS53-203ENST00000401468 UBE2CO00762 179 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 IGKV2D-40P01614 121 aaPredicted RBP6.69□□□□□ -1.34
VPS53-203ENST00000401468 CT45A10P0DMU9 189 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 BCL2P10415 239 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 CRISP2P16562 243 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 CSN1S1P47710 185 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 ATP5G3P48201 142 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 UBE2G2P60604 165 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 CLLU1Q5K131 121 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 IQCF2Q8IXL9 164 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 TMEM75Q8N9X5 138 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 SYT8Q8NBV8 401 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 CSNK1G2-AS1Q8NCQ2 148 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 OR10J6PQ8NGY7 276 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms