RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ANKRD31Q8N7Z5 1873 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 DOCK6Q96HP0 2047 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 CEP290O15078 2479 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 SLX4Q8IY92 1834 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 A0A0D9SEW6 157 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 C3orf85A0A1B0GTC6 90 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 COLCA2A8K830 154 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 A8MWP4 228 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 TMEM262E9PQX1 116 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 H3BQ15 152 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 BUB1B-PAK6H3BSN5 160 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 APOC4-APOC2K7ER74 178 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 HRASP01112 189 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 APOC2P02655 101 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 NPPCP23582 126 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 LINC01545Q5VT33 79 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 PHF5AQ7RTV0 110 aaKnown RBP2.71□□□□□ -1.98
HMGB1-204ENST00000399489 TEN1Q86WV5 123 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 APCDD1LQ8NCL9 501 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 RBMXL1Q96E39 390 aaKnown RBP2.71□□□□□ -1.98
HMGB1-204ENST00000399489 IMMP1LQ96LU5 166 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 AQP10Q96PS8 301 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 C11orf1Q9H5F2 150 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 TMEM106BQ9NUM4 274 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 TXNL4BQ9NX01 149 aaKnown RBP2.71□□□□□ -1.98
HMGB1-204ENST00000399489 CCDC88AQ3V6T2 1871 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 SLC25A5P05141 298 aaKnown RBP2.7□□□□□ -1.98
HMGB1-204ENST00000399489 DYNLT3P51808 116 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 YPEL3P61236 119 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-204ENST00000399489 KHDC3LQ587J8 217 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 ALKAL2Q6UX46 152 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 TMEM91Q6ZNR0 172 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 BPIFA4PQ86YQ2 179 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 HIST3H2BBQ8N257 126 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 MIR7-3HGQ8N6C7 128 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 OTOSQ8NHW6 89 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 PRELID3AQ96N28 172 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 AGPAT4-IT1Q9H0P7 198 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 LINC00574Q9H8X3 128 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 ASF1BQ9NVP2 202 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 PLXNB3Q9ULL4 1909 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 BCORQ6W2J9 1755 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 MRC1P22897 1456 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 OTOFQ9HC10 1997 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 TTC28Q96AY4 2481 aa2.7□□□□□ -1.98
HMGB1-204ENST00000399489 KIAA0100Q14667 2235 aaKnown RBP2.69□□□□□ -1.98
HMGB1-204ENST00000399489 LAMA2P24043 3122 aaKnown RBP2.69□□□□□ -1.98
HMGB1-204ENST00000399489 ATG2AQ2TAZ0 1938 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 IGLV3-10A0A075B6K4 115 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 A6NED7 52 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 SYNGR2O43760 224 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 HIST1H2BKO60814 126 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 IGKV1D-33P01593 117 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 IGKV1-33P01594 117 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 TRACP01848 142 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 TRGV3P03979 118 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 HIST1H2BJP06899 126 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 CCL3P10147 92 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 CRYGAP11844 174 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 SNRPD3P62318 126 aaKnown RBP2.69□□□□□ -1.98
HMGB1-204ENST00000399489 UNQ5815/PRO19632Q6UWF5 114 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 C10orf82Q8WW14 230 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 YPEL2Q96QA6 119 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 PLA2G2FQ9BZM2 168 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 NPVFQ9HCQ7 196 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 ZNF355PQ9NSJ1 428 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 SLC39A9Q9NUM3 307 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 DSCAML1Q8TD84 2053 aa2.69□□□□□ -1.98
HMGB1-204ENST00000399489 SCN7AQ01118 1682 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 H3BT86 120 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 LEPROTO15243 131 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 TRGC1P0CF51 173 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 RPS10P46783 165 aaKnown RBP2.68□□□□□ -1.98
HMGB1-204ENST00000399489 TMEM155Q4W5P6 130 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 LINC01554Q52M75 96 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 OR2T2Q6IF00 324 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 MORN4Q8NDC4 146 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 C16orf95Q9H693 158 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 EPDR1Q9UM22 224 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 LINC00312Q9Y6C7 94 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 SERP1Q9Y6X1 66 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 NCKAP5O14513 1909 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 SCN11AQ9UI33 1791 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 ARFGEF2Q9Y6D5 1785 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 TRPM7Q96QT4 1865 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 TRIP11Q15643 1979 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 A0A0D9SG52 128 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 MCRIP1C9JLW8 97 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 K7ERJ3 54 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 M0R2P5 195 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 C1QAP02745 245 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 MT-ATP8P03928 68 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 FABP4P15090 132 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 RPL18Q07020 188 aaKnown RBP2.68□□□□□ -1.98
HMGB1-204ENST00000399489 C10orf91Q5T1B1 145 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 C10orf111Q8N326 155 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 MRPS24Q96EL2 167 aaKnown RBP2.68□□□□□ -1.98
HMGB1-204ENST00000399489 ZNF714Q96N38 554 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 UQCR10Q9UDW1 63 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 TPRKBQ9Y3C4 175 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms