RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 SIVA1O15304 175 aa13.88□□□□□ -0.19
SQSTM1-202ENST00000389805 ETDBQ3ZM63 59 aa13.88□□□□□ -0.19
SQSTM1-202ENST00000389805 AMTNQ6UX39 209 aa13.88□□□□□ -0.19
SQSTM1-202ENST00000389805 BMI1P35226 326 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 ORMDL3Q8N138 153 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 ARPC1AQ92747 370 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 PSG8Q9UQ74 426 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 CACNA1BQ00975 2339 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 CD300EQ496F6 205 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 C16orf54Q6UWD8 224 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 TRGV9Q99603 122 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 SLC25A39Q9BZJ4 359 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 AGRNO00468 2067 aa13.87□□□□□ -0.19
SQSTM1-202ENST00000389805 H3BMG7 143 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 NPYP01303 97 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 CRYGCP07315 174 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 MRPL51Q4U2R6 128 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 A0A1B0GV72 72 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 TEX22C9J3V5 150 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 RBP4P02753 201 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 KLRD1Q13241 179 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 PLGLAQ15195 96 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 CCDC144NLQ6NUI1 221 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 ATP6V0BQ99437 205 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 CHAC1Q9BUX1 264 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 TIMM23O14925 209 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 CKS2P33552 79 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 RAB9AP51151 201 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 FAM104BQ5XKR9 115 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 GTSCR1Q86UQ5 136 aa13.86□□□□□ -0.19
SQSTM1-202ENST00000389805 ATP5G2Q06055 141 aa13.85□□□□□ -0.19
SQSTM1-202ENST00000389805 HIVEP3Q5T1R4 2406 aa13.85□□□□□ -0.19
SQSTM1-202ENST00000389805 INSL3P51460 131 aa13.85□□□□□ -0.19
SQSTM1-202ENST00000389805 GAS8-AS1O95177 125 aa13.84□□□□□ -0.19
SQSTM1-202ENST00000389805 SPAG8Q99932 426 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-202ENST00000389805 SPANXB1Q9NS25 103 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-202ENST00000389805 PRSS1P07477 247 aa13.83□□□□□ -0.19
SQSTM1-202ENST00000389805 FBXL19-AS1Q494R0 122 aa13.83□□□□□ -0.19
SQSTM1-202ENST00000389805 S4R3C0 116 aa13.83□□□□□ -0.19
SQSTM1-202ENST00000389805 WI2-2373I1.2A0A1W2PRP0 233 aa13.83□□□□□ -0.2
SQSTM1-202ENST00000389805 TMEM189A5PLL7 270 aa13.83□□□□□ -0.2
SQSTM1-202ENST00000389805 LY6LH3BQJ8 138 aa13.83□□□□□ -0.2
SQSTM1-202ENST00000389805 CEACAM3P40198 252 aa13.83□□□□□ -0.2
SQSTM1-202ENST00000389805 CNIH1O95406 144 aa13.83□□□□□ -0.2
SQSTM1-202ENST00000389805 LCNL1Q6ZST4 164 aa13.83□□□□□ -0.2
SQSTM1-202ENST00000389805 TRBV25-1A0A075B6N4 114 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 CT45A10P0DMU9 189 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 CKS1BP61024 79 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 KLF17Q5JT82 389 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 ZFHX3Q15911 3703 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 FCER1GP30273 86 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 TWIST1Q15672 202 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 PVRIGQ6DKI7 326 aa13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 PHLDA1Q8WV24 401 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-202ENST00000389805 KLRB1Q12918 225 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 SMPXQ9UHP9 88 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 EVI2AP22794 236 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 PPIFP30405 207 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 PAX8Q06710 450 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 ZNF493Q6ZR52 646 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 SVIPQ8NHG7 77 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 MSRB1Q9NZV6 116 aa13.81□□□□□ -0.2
SQSTM1-202ENST00000389805 A0A1B0GW15 77 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 HOXB4P17483 251 aaPredicted RBP13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 ZNF562Q6V9R5 426 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 TRBV19A0A075B6N1 114 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 SCGB1A1P11684 91 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 LEPP41159 167 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 GATD1Q8NB37 220 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 RAB1BQ9H0U4 201 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 HHLA3Q9XRX5 114 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 TRAV26-1A0A087WT03 109 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 K7EQM0 130 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 ZC2HC1BQ5TFG8 222 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 LY6G5BQ8NDX9 201 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 ZNF479Q96JC4 524 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 RASL11BQ9BPW5 248 aa13.8□□□□□ -0.2
SQSTM1-202ENST00000389805 A0A1W2PPR1 153 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 IGLL5B9A064 214 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 TMEM75Q8N9X5 138 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 FOXC2Q99958 501 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 TMEM160Q9NX00 188 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 U3KQK5 164 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 I3L2K1 104 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 J3QR89 54 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 HES1Q14469 280 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 SIGLEC15Q6ZMC9 328 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 CEND1Q8N111 149 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 VPS13CQ709C8 3753 aa13.79□□□□□ -0.2
SQSTM1-202ENST00000389805 SH2D1AO60880 128 aa13.78□□□□□ -0.2
SQSTM1-202ENST00000389805 ODF1Q14990 250 aa13.78□□□□□ -0.2
SQSTM1-202ENST00000389805 FOXI2Q6ZQN5 318 aa13.78□□□□□ -0.2
SQSTM1-202ENST00000389805 NDUFS8O00217 210 aa13.78□□□□□ -0.2
SQSTM1-202ENST00000389805 DPM3Q9P2X0 92 aa13.78□□□□□ -0.2
SQSTM1-202ENST00000389805 GATA1P15976 413 aaPredicted RBP13.77□□□□□ -0.2
SQSTM1-202ENST00000389805 LY6DQ14210 128 aa13.77□□□□□ -0.2
SQSTM1-202ENST00000389805 IGKV1-17P01599 117 aa13.77□□□□□ -0.21
SQSTM1-202ENST00000389805 Q6AWC8 147 aa13.77□□□□□ -0.21
SQSTM1-202ENST00000389805 MAPKAPK5-AS1Q8N8E1 139 aa13.77□□□□□ -0.21
SQSTM1-202ENST00000389805 CELSR1Q9NYQ6 3014 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms