RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ZNF702PQ9H963 129 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 C21orf62Q9NYP8 219 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 EPDR1Q9UM22 224 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 RPH3ALQ9UNE2 315 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 C2orf70A6NJV1 201 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 CYSRT1A8MQ03 144 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 TRGV3P03979 118 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 IGLL1P15814 213 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 MFAP4P55083 255 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 FN1P02751 2386 aaKnown RBP9.63□□□□□ -0.87
CIITA-202ENST00000381835 PGPA6NDG6 321 aa9.63□□□□□ -0.87
CIITA-202ENST00000381835 GNG7O60262 68 aa9.63□□□□□ -0.87
CIITA-202ENST00000381835 IGLC1P0CG04 106 aa9.63□□□□□ -0.87
CIITA-202ENST00000381835 ORM2P19652 201 aa9.63□□□□□ -0.87
CIITA-202ENST00000381835 PRR31Q5SQ13 230 aa9.63□□□□□ -0.87
CIITA-202ENST00000381835 TCF24Q7RTU0 167 aa9.63□□□□□ -0.87
CIITA-202ENST00000381835 ZNF418Q8TF45 676 aaPredicted RBP9.63□□□□□ -0.87
CIITA-202ENST00000381835 A0A1B0GXF2 115 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 PF4V1P10720 104 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 HBBP68871 147 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 LCNL1Q6ZST4 164 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 OR1B1Q8NGR6 318 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 TRGV9Q99603 122 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 CLEC5AQ9NY25 188 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 OR2T8A6NH00 312 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 F8W735 103 aaPredicted RBP9.62□□□□□ -0.87
CIITA-202ENST00000381835 CCL25O15444 150 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 MYCNOSP40205 109 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 FAM162BQ5T6X4 162 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 C10orf99Q6UWK7 81 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 Q6ZVH6 145 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 ZNF738Q8NE65 137 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 STXBP6Q8NFX7 210 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 GPR82Q96P67 336 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 TMEM70Q9BUB7 260 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 KLK15Q9H2R5 256 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 COX11Q9Y6N1 276 aa9.62□□□□□ -0.87
CIITA-202ENST00000381835 SETD2Q9BYW2 2564 aaPredicted RBP9.62□□□□□ -0.87
CIITA-202ENST00000381835 IGKV1-17P01599 117 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 KLK9Q2XQG4 91 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 SMIM12Q96EX1 92 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 RPP21Q9H633 154 aaKnown RBP9.61□□□□□ -0.87
CIITA-202ENST00000381835 KLK9Q9UKQ9 250 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 FOXA3P55318 350 aaPredicted RBP9.61□□□□□ -0.87
CIITA-202ENST00000381835 CFHR3Q02985 330 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 ATP5G2Q06055 141 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 SPATA12Q7Z6I5 190 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 URB1-AS1Q96HZ7 61 aa9.61□□□□□ -0.87
CIITA-202ENST00000381835 FAM223BA6NKX1 122 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 A8MWL6 223 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 IGLV1-40P01703 118 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 P01737 135 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 PPBPP02775 128 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 CLEC3BP05452 202 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 NBEAP1P0C6P0 100 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 PSG1P11464 419 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 GPR183P32249 361 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 UBE2V1Q13404 147 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 LEMD1Q68G75 181 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 FAM223AQ8IWN6 122 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 OR4F17Q8NGA8 305 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 ZNF502Q8TBZ5 544 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 EEF1AKMT3Q96AZ1 226 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 PGLYRP4Q96LB8 373 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 ZNF580Q9UK33 172 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 KLF12Q9Y4X4 402 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 TRAV30A0A087WSZ9 112 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 OR4C46A6NHA9 309 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 H3BUA1 57 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 M0QZ24 198 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 RAB9AP51151 201 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 HILS1P60008 231 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 CLEC19AQ6UXS0 136 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 LINC00322Q6ZN03 302 aaPredicted RBP9.6□□□□□ -0.87
CIITA-202ENST00000381835 DAZAP1Q96EP5 407 aaKnown RBP9.6□□□□□ -0.87
CIITA-202ENST00000381835 MLST8Q9BVC4 326 aa9.6□□□□□ -0.87
CIITA-202ENST00000381835 IGHV3-35A0A0C4DH35 117 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 K7EP13 123 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 TOMM40O96008 361 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 IGHV3-11P01762 117 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 IGHG4P01861 327 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 Q6ZSV7 163 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 Q8N2B8 174 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 GTSF1Q8WW33 167 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 FMC1Q96HJ9 113 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 CCDC140Q96MF4 163 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 TRBV7-1A0A0A6YYK4 115 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 IGHV1-24A0A0C4DH33 117 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 RNASE1P07998 156 aaKnown RBP9.59□□□□□ -0.87
CIITA-202ENST00000381835 CTSGP08311 255 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 LYZP61626 148 aa9.59□□□□□ -0.87
CIITA-202ENST00000381835 RNASE8Q8TDE3 154 aaKnown RBP9.59□□□□□ -0.87
CIITA-202ENST00000381835 CHCHD1Q96BP2 118 aaKnown RBP9.59□□□□□ -0.87
CIITA-202ENST00000381835 TMEM238C9JI98 176 aa9.58□□□□□ -0.88
CIITA-202ENST00000381835 H3BTX0 84 aa9.58□□□□□ -0.88
CIITA-202ENST00000381835 SYS1-DBNDD2H3BUS1 97 aa9.58□□□□□ -0.88
CIITA-202ENST00000381835 LEPROTL1O95214 131 aa9.58□□□□□ -0.88
CIITA-202ENST00000381835 PSMB8P28062 276 aa9.58□□□□□ -0.88
CIITA-202ENST00000381835 FCGR2BP31994 310 aaPredicted RBP9.58□□□□□ -0.88
CIITA-202ENST00000381835 CT83Q5H943 113 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms