RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 NPIPB5A8MRT5 1133 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 LYNX1G3V0Z9 82 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 SIVA1O15304 175 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 LYNX1P0DP58 116 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 RPL24P83731 157 aaKnown RBP8.67□□□□□ -1.02
CCDC40-203ENST00000374877 TNFRSF14Q92956 283 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 KAAG1Q9UBP8 84 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 COL6A6A6NMZ7 2263 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 MRPS12O15235 138 aaKnown RBP8.67□□□□□ -1.02
CCDC40-203ENST00000374877 PRB1P04280 392 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 EGR2P11161 476 aaPredicted RBP8.67□□□□□ -1.02
CCDC40-203ENST00000374877 IGFL4Q6B9Z1 124 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 RALYQ9UKM9 306 aaKnown RBP8.67□□□□□ -1.02
CCDC40-203ENST00000374877 SAMD5Q5TGI4 173 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 OR5A1Q8NGJ0 315 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 MSRB1Q9NZV6 116 aa8.67□□□□□ -1.02
CCDC40-203ENST00000374877 PRSS1P07477 247 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 NPFFR1Q9GZQ6 430 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 TIMM23O14925 209 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 ORM1P02763 201 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 SMIM13P0DJ93 91 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 NEGR1Q7Z3B1 354 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 MAP1LC3AQ9H492 121 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 IGKV2D-26A0A0A0MRZ7 120 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 FBLL1A6NHQ2 334 aaKnown RBP8.66□□□□□ -1.02
CCDC40-203ENST00000374877 IGHV3-23P01764 117 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 EVI2AP22794 236 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 LEPP41159 167 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 FXYD2P54710 66 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 PAX8Q06710 450 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 PRR25Q96S07 402 aa8.66□□□□□ -1.02
CCDC40-203ENST00000374877 K7ERJ3 54 aa8.65□□□□□ -1.02
CCDC40-203ENST00000374877 GAS8-AS1O95177 125 aa8.65□□□□□ -1.02
CCDC40-203ENST00000374877 ZNF80P51504 273 aaPredicted RBP8.65□□□□□ -1.02
CCDC40-203ENST00000374877 PPIAL4CA0A0B4J2A2 164 aa8.65□□□□□ -1.02
CCDC40-203ENST00000374877 PPIAL4GP0DN37 164 aa8.65□□□□□ -1.02
CCDC40-203ENST00000374877 PDE6HQ13956 83 aa8.65□□□□□ -1.02
CCDC40-203ENST00000374877 IGHV3OR16-8A0A075B7F1 116 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 WI2-2373I1.2A0A1W2PRP0 233 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 C19orf84I3L1E1 186 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 S100A7AQ86SG5 101 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 TMEM190Q8WZ59 177 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 VGLL1Q99990 258 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 ONECUT1Q9UBC0 465 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 HLA-DMBP28068 263 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 HES1Q14469 280 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 DTX2Q86UW9 622 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 PPIFP30405 207 aaKnown RBP8.64□□□□□ -1.03
CCDC40-203ENST00000374877 GTSCR1Q86UQ5 136 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 CHAC1Q9BUX1 264 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 RAB1BQ9H0U4 201 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 CACNA1BQ00975 2339 aa8.64□□□□□ -1.03
CCDC40-203ENST00000374877 K7EMI3 77 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 BMI1P35226 326 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 C11orf71Q6IPW1 123 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 SPOCK3Q9BQ16 436 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 NHP2Q9NX24 153 aaKnown RBP8.63□□□□□ -1.03
CCDC40-203ENST00000374877 IGHV3-35A0A0C4DH35 117 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 GATA1P15976 413 aaPredicted RBP8.63□□□□□ -1.03
CCDC40-203ENST00000374877 MFAP4P55083 255 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 FOXC2Q99958 501 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 IGSF10Q6WRI0 2623 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 ARHGAP32A7KAX9 2087 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 ABCA4P78363 2273 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 NBR2O15453 112 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 ODF1Q14990 250 aa8.63□□□□□ -1.03
CCDC40-203ENST00000374877 TEX48A0A1B0GUV7 120 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 RPL7P18124 248 aaKnown RBP8.62□□□□□ -1.03
CCDC40-203ENST00000374877 SRSF8Q9BRL6 282 aaKnown RBP8.62□□□□□ -1.03
CCDC40-203ENST00000374877 TNFRSF6BO95407 300 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 IGKCP01834 107 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 IGLC6P0CF74 106 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 ZC2HC1BQ5TFG8 222 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 RNF185Q96GF1 192 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 CSMD1Q96PZ7 3565 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 FCER1GP30273 86 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 ZNF562Q6V9R5 426 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 RNF5Q99942 180 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 HHLA3Q9XRX5 114 aa8.62□□□□□ -1.03
CCDC40-203ENST00000374877 HIVEP3Q5T1R4 2406 aa8.61□□□□□ -1.03
CCDC40-203ENST00000374877 TMEM158Q8WZ71 300 aa8.61□□□□□ -1.03
CCDC40-203ENST00000374877 TMEM160Q9NX00 188 aa8.61□□□□□ -1.03
CCDC40-203ENST00000374877 C21orf62Q9NYP8 219 aa8.61□□□□□ -1.03
CCDC40-203ENST00000374877 TRBV25-1A0A075B6N4 114 aa8.61□□□□□ -1.03
CCDC40-203ENST00000374877 ERCC8Q13216 396 aa8.6□□□□□ -1.03
CCDC40-203ENST00000374877 FANCD2OSQ96PS1 177 aa8.6□□□□□ -1.03
CCDC40-203ENST00000374877 NXT2Q9NPJ8 142 aaKnown RBP8.6□□□□□ -1.03
CCDC40-203ENST00000374877 ANKHD1Q8IWZ3 2542 aaKnown RBP8.6□□□□□ -1.03
CCDC40-203ENST00000374877 SMIM17P0DL12 118 aa8.6□□□□□ -1.03
CCDC40-203ENST00000374877 NCBP2LA6PVI3 153 aaKnown RBP8.6□□□□□ -1.03
CCDC40-203ENST00000374877 DPM2O94777 84 aa8.6□□□□□ -1.03
CCDC40-203ENST00000374877 SAMD13Q5VXD3 122 aa8.6□□□□□ -1.03
CCDC40-203ENST00000374877 HIGD1BQ9P298 99 aa8.6□□□□□ -1.03
CCDC40-203ENST00000374877 TRAV40A0A0B4J280 105 aa8.59□□□□□ -1.03
CCDC40-203ENST00000374877 FABP5P3A8MUU1 101 aa8.59□□□□□ -1.03
CCDC40-203ENST00000374877 LY6LH3BQJ8 138 aa8.59□□□□□ -1.03
CCDC40-203ENST00000374877 KLRD1Q13241 179 aa8.59□□□□□ -1.03
CCDC40-203ENST00000374877 GTSF1LQ9H1H1 148 aa8.59□□□□□ -1.03
CCDC40-203ENST00000374877 IGLV11-55A0A075B6I3 123 aa8.59□□□□□ -1.03
CCDC40-203ENST00000374877 A0A1W2PPR1 153 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms