RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ZNF492Q9P255 531 aa6.92□□□□□ -1.3
UPF2-202ENST00000357604 LY96Q9Y6Y9 160 aa6.92□□□□□ -1.3
UPF2-202ENST00000357604 TRAV34A0A0B4J273 112 aa6.92□□□□□ -1.3
UPF2-202ENST00000357604 ZNF705FA8MVS1 300 aaPredicted RBP6.92□□□□□ -1.3
UPF2-202ENST00000357604 APOHP02749 345 aaPredicted RBP6.92□□□□□ -1.3
UPF2-202ENST00000357604 FCER1GP30273 86 aa6.92□□□□□ -1.3
UPF2-202ENST00000357604 F5H768 121 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 ATP5G3P48201 142 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 NHLRC2Q8NBF2 726 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 NUPR2A6NF83 97 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 AZU1P20160 251 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 EPG5Q9HCE0 2579 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 DMRT1Q9Y5R6 373 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 U3KQE9 123 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 TRAV8-6A0A0B4J262 113 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 A8MWV9 139 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 ATP5G1P05496 136 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 Q6ZWC4 215 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 SSTP61278 116 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 PMS2P11Q13670 270 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 MRPL36Q9P0J6 103 aaKnown RBP6.91□□□□□ -1.3
UPF2-202ENST00000357604 PRUNE2Q8WUY3 3088 aa6.91□□□□□ -1.3
UPF2-202ENST00000357604 EREGO14944 169 aa6.9□□□□□ -1.3
UPF2-202ENST00000357604 SH2D1AO60880 128 aa6.9□□□□□ -1.3
UPF2-202ENST00000357604 KIAA2026Q5HYC2 2103 aa6.9□□□□□ -1.3
UPF2-202ENST00000357604 YTHDF2Q9Y5A9 579 aaKnown RBP6.9□□□□□ -1.3
UPF2-202ENST00000357604 M0R2P5 195 aa6.9□□□□□ -1.31
UPF2-202ENST00000357604 M0R2Z0 102 aa6.9□□□□□ -1.31
UPF2-202ENST00000357604 DEFB130BP0DP73 79 aa6.9□□□□□ -1.31
UPF2-202ENST00000357604 DEFB130AP0DP74 79 aa6.9□□□□□ -1.31
UPF2-202ENST00000357604 PATE2Q6UY27 113 aa6.9□□□□□ -1.31
UPF2-202ENST00000357604 KRTAP10-3P60369 221 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 AMMECR1LQ6DCA0 310 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 CR1P17927 2039 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 H3BMM0 161 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 IGLC2P0DOY2 106 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 RNF212Q495C1 297 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 TMEM263Q8WUH6 116 aaKnown RBP6.89□□□□□ -1.31
UPF2-202ENST00000357604 TMEM101Q96IK0 257 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 PARLQ9H300 379 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 FRMD6-AS1P0C7T7 363 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 FAM74A4Q5TZK3 123 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 NAV2Q8IVL1 2488 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 CYSRT1A8MQ03 144 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 BEAN1Q3B7T3 259 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 HIST2H2BDQ6DRA6 164 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 UNC80Q8N2C7 3258 aa6.89□□□□□ -1.31
UPF2-202ENST00000357604 TRBV6-1A0A0K0K1D8 114 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 RAB5AP20339 215 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 SRIP30626 198 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 SEC11CQ9BY50 192 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 TRAV10A0A0B4J240 114 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 DGAT2L7PQ6IED9 249 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 RMI2Q96E14 147 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 B9D2Q9BPU9 175 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 M0R381 172 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 TRPT1Q86TN4 253 aaKnown RBP6.88□□□□□ -1.31
UPF2-202ENST00000357604 PRR14LQ5THK1 2151 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 H3BQ15 152 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 ZNF705DP0CH99 300 aaPredicted RBP6.88□□□□□ -1.31
UPF2-202ENST00000357604 ZNF705BP0CI00 300 aaPredicted RBP6.88□□□□□ -1.31
UPF2-202ENST00000357604 ICOSQ9Y6W8 199 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 MYO18BQ8IUG5 2567 aa6.88□□□□□ -1.31
UPF2-202ENST00000357604 TRAV12-2A0A075B6T6 113 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 ELOBQ15370 118 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 Q8TAT8 98 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 C2CD4CQ8TF44 421 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 CLUHP3Q96NS8 147 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 RPL36AP83881 106 aaKnown RBP6.87□□□□□ -1.31
UPF2-202ENST00000357604 RPL36ALQ969Q0 106 aaKnown RBP6.87□□□□□ -1.31
UPF2-202ENST00000357604 SFRP2Q96HF1 295 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 KMT2BQ9UMN6 2715 aaPredicted RBP6.87□□□□□ -1.31
UPF2-202ENST00000357604 SLC17A3O00476 420 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 S100A6P06703 90 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 PMCHP20382 165 aa6.87□□□□□ -1.31
UPF2-202ENST00000357604 TRAV9-1A0A075B6T8 112 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 IGKV1OR2-108A0A075B7D4 117 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 EGFEM1PQ0D2K5 195 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 C15orf53Q8NAA6 179 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 PGLYRP4Q96LB8 373 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 GAGE12BA1L429 117 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 GAGE7O76087 117 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 CRPP02741 224 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 GAGE12FP0CL80 117 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 GAGE12GP0CL81 117 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 GAGE12IP0CL82 117 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 CCL18P55774 89 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 AGPAT4-IT1Q9H0P7 198 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 NOP10Q9NPE3 64 aaKnown RBP6.86□□□□□ -1.31
UPF2-202ENST00000357604 OSTCQ9NRP0 149 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 WDR87Q6ZQQ6 2873 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 M0R3E3 92 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 NUDT3O95989 172 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 NDUFAF3Q9BU61 184 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 GFRA4Q9GZZ7 299 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 TMEM262E9PQX1 116 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 F6UB75 175 aa6.86□□□□□ -1.31
UPF2-202ENST00000357604 BTN1A1Q13410 526 aa6.85□□□□□ -1.31
UPF2-202ENST00000357604 FA2HQ7L5A8 372 aa6.85□□□□□ -1.31
UPF2-202ENST00000357604 DCANP1Q8TF63 244 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms