RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 LY6HO94772 140 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 COX8AP10176 69 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 FGF6P10767 208 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 C9orf66Q5T8R8 295 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 ZNF493Q6ZR52 646 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 F8VRH5 84 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 G3V318 75 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 CEND1Q8N111 149 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 KAAG1Q9UBP8 84 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 ASCC3Q8N3C0 2202 aaKnown RBP5.15□□□□□ -1.59
UPF2-201ENST00000356352 IGLV1-44P01699 117 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 TMEM258P61165 79 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 PRR31Q5SQ13 230 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 VOPP1Q96AW1 172 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 LINC00479Q96M42 142 aa5.15□□□□□ -1.59
UPF2-201ENST00000356352 PTPRZ1P23471 2315 aaPredicted RBP5.14□□□□□ -1.59
UPF2-201ENST00000356352 A0A1B0GUS0 222 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 NXPH4O95158 308 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 PYY3Q5JQD4 70 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 ZNF664Q8N3J9 261 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 VPREB3Q9UKI3 123 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 IGKV1-6A0A0C4DH72 117 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 K7EP34 96 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 IFITM1P13164 125 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 ARID1AO14497 2285 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 J3QQQ9 107 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 LINC00205P59089 165 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 SLC25A29Q8N8R3 303 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 CARD19Q96LW7 228 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 ORMDL1Q9P0S3 153 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 POLR3KQ9Y2Y1 108 aaPredicted RBP5.14□□□□□ -1.59
UPF2-201ENST00000356352 V9GYV3 84 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 IGLV3-9A0A075B6K5 115 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 PRSS47A8MTI9 375 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 FOXE3Q13461 319 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 CFHR4Q92496 578 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 C16orf74Q96GX8 76 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 SIPA1L1O43166 1804 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 TRPM7Q96QT4 1865 aa5.14□□□□□ -1.59
UPF2-201ENST00000356352 IGKV2D-24A0A075B6R9 120 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 TRAV12-2A0A075B6T6 113 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 IGHV3-38A0A0C4DH36 116 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 NDUFS5O43920 106 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 CITED2Q99967 270 aaPredicted RBP5.13□□□□□ -1.59
UPF2-201ENST00000356352 DKK4Q9UBT3 224 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 LCTP09848 1927 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 hADV29S1A0JD25 119 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 ACYP1P07311 99 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 KNTC1P50748 2209 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 RSPO3Q9BXY4 272 aaPredicted RBP5.13□□□□□ -1.59
UPF2-201ENST00000356352 SIGLEC8Q9NYZ4 499 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 LTAP01374 205 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 FUSP35637 526 aaKnown RBP eCLIP5.13□□□□□ -1.59
UPF2-201ENST00000356352 IL15RAQ13261 267 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 POU2AF1Q16633 256 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 PRSS57Q6UWY2 283 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 C11orf52Q96A22 123 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 ZNF581Q9P0T4 197 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 TRAV26-2A0A0B4J265 109 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 C15orf65H3BRN8 121 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 HOXB4P17483 251 aaPredicted RBP5.13□□□□□ -1.59
UPF2-201ENST00000356352 PRR30Q53SZ7 412 aaPredicted RBP5.13□□□□□ -1.59
UPF2-201ENST00000356352 MORN5Q5VZ52 161 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 RNF144BQ7Z419 303 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 C1orf43Q9BWL3 253 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 ICOSQ9Y6W8 199 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 IGLC1P0CG04 106 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 Q6ZR03 302 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 C5orf24Q7Z6I8 188 aa5.13□□□□□ -1.59
UPF2-201ENST00000356352 KNL1Q8NG31 2342 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 IGKV1-39P01597 117 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 IGKV1D-39P04432 117 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 ANKRD29Q8N6D5 301 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 ETDCA0A1B0GVM5 59 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 EGR2P11161 476 aaPredicted RBP5.12□□□□□ -1.59
UPF2-201ENST00000356352 FXYD5Q96DB9 178 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 ZC2HC1AQ96GY0 325 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 IGKV1OR2-108A0A075B7D4 117 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 IGHV2-5P01817 119 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 NBL1P41271 181 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 MRPL35Q9NZE8 188 aaKnown RBP5.12□□□□□ -1.59
UPF2-201ENST00000356352 SHISA9B4DS77 424 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 NPYP01303 97 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 ADCYAP1P18509 176 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 WT1-ASQ06250 92 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 MRPL23Q16540 153 aaKnown RBP5.12□□□□□ -1.59
UPF2-201ENST00000356352 KLHDC3Q9BQ90 382 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 ZNRD1Q9P1U0 126 aa5.12□□□□□ -1.59
UPF2-201ENST00000356352 A0A1W2PPM0 123 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 CCL24O00175 119 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 CRYGCP07315 174 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 WIPF2Q8TF74 440 aaPredicted RBP5.11□□□□□ -1.59
UPF2-201ENST00000356352 MRPL36Q9P0J6 103 aaKnown RBP5.11□□□□□ -1.59
UPF2-201ENST00000356352 NDUFB1O75438 58 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 CCL18P55774 89 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 TIRAPP58753 221 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 FHL1Q13642 323 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 NOP10Q9NPE3 64 aaKnown RBP5.11□□□□□ -1.59
UPF2-201ENST00000356352 BRWD1Q9NSI6 2320 aa5.11□□□□□ -1.59
UPF2-201ENST00000356352 IGLC2P0DOY2 106 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms