RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ERCC8Q13216 396 aa14.95□□□□□ -0.02
COL9A3-201ENST00000343916 USP9XQ93008 2570 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-201ENST00000343916 OR4C46A6NHA9 309 aa14.95□□□□□ -0.02
COL9A3-201ENST00000343916 GOSR1O95249 250 aa14.95□□□□□ -0.02
COL9A3-201ENST00000343916 SAPCD1Q5SSQ6 148 aa14.95□□□□□ -0.02
COL9A3-201ENST00000343916 PIFOQ8TCI5 191 aa14.95□□□□□ -0.02
COL9A3-201ENST00000343916 TIMM8BQ9Y5J9 83 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-201ENST00000343916 PCP4P48539 62 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 ERASQ7Z444 233 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 IGHV1-69DA0A0B4J2H0 117 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 IGHV1-69P01742 117 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 KLK9Q2XQG4 91 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 ZNF738Q8NE65 137 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 RNASE8Q8TDE3 154 aaKnown RBP14.94□□□□□ -0.02
COL9A3-201ENST00000343916 EEF1AKMT3Q96AZ1 226 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 PIMREGQ9BSJ6 248 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 KLK9Q9UKQ9 250 aa14.94□□□□□ -0.02
COL9A3-201ENST00000343916 hDV102S1A0JD36 115 aa14.93□□□□□ -0.02
COL9A3-201ENST00000343916 LEPROTL1O95214 131 aa14.93□□□□□ -0.02
COL9A3-201ENST00000343916 IGHV4-38-2P0DP08 117 aa14.93□□□□□ -0.02
COL9A3-201ENST00000343916 Q6AWC8 147 aa14.93□□□□□ -0.02
COL9A3-201ENST00000343916 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.93□□□□□ -0.02
COL9A3-201ENST00000343916 MOB4Q9Y3A3 225 aa14.93□□□□□ -0.02
COL9A3-201ENST00000343916 MCRIP2Q9BUT9 160 aaKnown RBP14.92□□□□□ -0.02
COL9A3-201ENST00000343916 UTP20O75691 2785 aaKnown RBP14.92□□□□□ -0.02
COL9A3-201ENST00000343916 ZFYVE26Q68DK2 2539 aa14.92□□□□□ -0.02
COL9A3-201ENST00000343916 UBE2V1Q13404 147 aa14.92□□□□□ -0.02
COL9A3-201ENST00000343916 LY6EQ16553 131 aa14.92□□□□□ -0.02
COL9A3-201ENST00000343916 COX8CQ7Z4L0 72 aa14.92□□□□□ -0.02
COL9A3-201ENST00000343916 AMN1Q8IY45 258 aa14.92□□□□□ -0.02
COL9A3-201ENST00000343916 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.92□□□□□ -0.021e-11■■■□□ 18.5
COL9A3-201ENST00000343916 TRAV41A0A0B4J266 112 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 ZNF575Q86XF7 245 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 GATD1Q8NB37 220 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 C10orf105Q8TEF2 133 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 DOPEY1Q5JWR5 2465 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 IGHV4-30-2A0A087WSY4 118 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 TRBV7-1A0A0A6YYK4 115 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 H0Y8G0 127 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 SYS1-DBNDD2H3BUS1 97 aa14.91□□□□□ -0.02
COL9A3-201ENST00000343916 A0A1B0GW15 77 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 S100A7P31151 101 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 ATP5J2P56134 94 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 ATP5G2Q06055 141 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 ARL6IP6Q8N6S5 226 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 D6R8Y8 96 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 MPV17L2Q567V2 206 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 ZNF493Q6ZR52 646 aa14.9□□□□□ -0.02
COL9A3-201ENST00000343916 A0A087X0K7 114 aa14.89□□□□□ -0.03
COL9A3-201ENST00000343916 ORM1P02763 201 aa14.89□□□□□ -0.03
COL9A3-201ENST00000343916 RAB9AP51151 201 aa14.89□□□□□ -0.03
COL9A3-201ENST00000343916 IL17RELQ6ZVW7 336 aa14.89□□□□□ -0.03
COL9A3-201ENST00000343916 METTL26Q96S19 204 aa14.89□□□□□ -0.03
COL9A3-201ENST00000343916 FAM106AQ4KMX7 169 aa14.89□□□□□ -0.03
COL9A3-201ENST00000343916 LOC389332A0A1B0GUA5 103 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 CRXO43186 299 aaPredicted RBP14.88□□□□□ -0.03
COL9A3-201ENST00000343916 TRGV3P03979 118 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 BMI1P35226 326 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 FER1L6-AS1Q8NA97 138 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 AP5S1Q9NUS5 200 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 TRBV12-3P01733 135 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 C19orf54Q5BKX5 351 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 CLEC2AQ6UVW9 174 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 PRSS3P2Q8NHM4 247 aa14.88□□□□□ -0.03
COL9A3-201ENST00000343916 CSPG4Q6UVK1 2322 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 IFI27P40305 119 aaPredicted RBP14.87□□□□□ -0.03
COL9A3-201ENST00000343916 TWIST1Q15672 202 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 FAM104BQ5XKR9 115 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 TRAV8-2A0A0B4J237 113 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 FBLL1A6NHQ2 334 aaKnown RBP14.87□□□□□ -0.03
COL9A3-201ENST00000343916 NRGNQ92686 78 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 PMCHL2Q9BQD1 86 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 MSRB1Q9NZV6 116 aa14.87□□□□□ -0.03
COL9A3-201ENST00000343916 MYO18BQ8IUG5 2567 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 C8orf86Q6ZUL3 223 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 SLC50A1Q9BRV3 221 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 ST20Q9HBF5 79 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 H3BUX3 64 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 PRB1P04280 392 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 PPIFP30405 207 aaKnown RBP14.86□□□□□ -0.03
COL9A3-201ENST00000343916 RBX1P62877 108 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 LOXL1Q08397 574 aaPredicted RBP14.86□□□□□ -0.03
COL9A3-201ENST00000343916 BBC3Q96PG8 261 aaPredicted RBP14.86□□□□□ -0.03
COL9A3-201ENST00000343916 AGPAT4-IT1Q9H0P7 198 aa14.86□□□□□ -0.03
COL9A3-201ENST00000343916 FABP5P3A8MUU1 101 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 SMKR1H3BMG3 65 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 NUDT3O95989 172 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 IGLC6P0CF74 106 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 VAMP3Q15836 100 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 MRPL51Q4U2R6 128 aaKnown RBP14.85□□□□□ -0.03
COL9A3-201ENST00000343916 FA2HQ7L5A8 372 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 OR4C5Q8NGB2 326 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 MEGF9Q9H1U4 602 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 OR5AL1P0C617 328 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 UNQ9165/PRO28630Q6UXU0 137 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 Q6ZS46 218 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 PRELID3AQ96N28 172 aa14.85□□□□□ -0.03
COL9A3-201ENST00000343916 ARL3P36405 182 aa14.84□□□□□ -0.03
COL9A3-201ENST00000343916 BLCAPP62952 87 aa14.84□□□□□ -0.03
COL9A3-201ENST00000343916 MAP1LC3CQ9BXW4 147 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms