RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 COX8AP10176 69 aa10.47□□□□□ -0.73
USP47-202ENST00000339865 RNF223E7ERA6 249 aa10.47□□□□□ -0.73
USP47-202ENST00000339865 PSMB8P28062 276 aa10.47□□□□□ -0.73
USP47-202ENST00000339865 WDR83OSQ9Y284 106 aa10.47□□□□□ -0.73
USP47-202ENST00000339865 PROP1O75360 226 aa10.47□□□□□ -0.73
USP47-202ENST00000339865 NDUFA12Q9UI09 145 aa10.47□□□□□ -0.73
USP47-202ENST00000339865 ZNF837Q96EG3 531 aaPredicted RBP10.46□□□□□ -0.73
USP47-202ENST00000339865 TMEM141Q96I45 108 aa10.46□□□□□ -0.73
USP47-202ENST00000339865 IGHV3-38A0A0C4DH36 116 aa10.46□□□□□ -0.73
USP47-202ENST00000339865 HLA-DRB4P13762 266 aa10.46□□□□□ -0.73
USP47-202ENST00000339865 RNASE13Q5GAN3 156 aaKnown RBP10.46□□□□□ -0.73
USP47-202ENST00000339865 HLA-DRB4X5D2U9 266 aa10.46□□□□□ -0.73
USP47-202ENST00000339865 IGHV1OR15-1A0A075B7D0 117 aa10.46□□□□□ -0.74
USP47-202ENST00000339865 ATOX1O00244 68 aa10.46□□□□□ -0.74
USP47-202ENST00000339865 SUPT4H1P63272 117 aaKnown RBP10.46□□□□□ -0.74
USP47-202ENST00000339865 HGFACQ04756 655 aa10.46□□□□□ -0.74
USP47-202ENST00000339865 CCL25O15444 150 aa10.46□□□□□ -0.74
USP47-202ENST00000339865 LAIR2Q6ISS4 152 aa10.46□□□□□ -0.74
USP47-202ENST00000339865 FNDC10F2Z333 226 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 M0R1W7 72 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 PIP4P2Q8N4L2 257 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 TRAV26-2A0A0B4J265 109 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 PCNX3Q9H6A9 2034 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 NHSQ6T4R5 1651 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 TMEM213A2RRL7 107 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 TGFBR3LH3BV60 316 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 ANGP03950 147 aaKnown RBP10.45□□□□□ -0.74
USP47-202ENST00000339865 TRAV1-1A0A0B4J248 108 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 C2orf66Q6UXQ4 117 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 PAPPA2Q9BXP8 1791 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 IGLV2-23P01705 113 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 C8orf49Q96NF6 230 aa10.45□□□□□ -0.74
USP47-202ENST00000339865 SPINK13Q1W4C9 94 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 ANKRD39Q53RE8 183 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 SH2D6Q7Z4S9 175 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 MRPL14Q6P1L8 145 aaKnown RBP10.44□□□□□ -0.74
USP47-202ENST00000339865 A0A0A6YYD4 124 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 LINC00271P0C7V0 271 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 SLC25A45Q8N413 288 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 C20orf144Q9BQM9 153 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 A0A1B0GW64 132 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 NTF4P34130 210 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 C9orf139Q6ZV77 190 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 PKIGQ9Y2B9 76 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 THBDP07204 575 aa10.44□□□□□ -0.74
USP47-202ENST00000339865 VMO1Q7Z5L0 202 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 ATG2AQ2TAZ0 1938 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 IGHV2-26A0A0B4J1V2 119 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 CDKN1BP46527 198 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 ZNF329Q86UD4 541 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.43□□□□□ -0.74
USP47-202ENST00000339865 C18orf32Q8TCD1 76 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 WIPF2Q8TF74 440 aaPredicted RBP10.43□□□□□ -0.74
USP47-202ENST00000339865 TRPM3Q9HCF6 1732 aaPredicted RBP10.43□□□□□ -0.74
USP47-202ENST00000339865 PAPPAQ13219 1627 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 IGLL1P15814 213 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 ZFP2Q6ZN57 461 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 XCL2Q9UBD3 114 aa10.43□□□□□ -0.74
USP47-202ENST00000339865 TIAF1O95411 115 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 WBP1Q96G27 269 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 MRPL35Q9NZE8 188 aaKnown RBP10.42□□□□□ -0.74
USP47-202ENST00000339865 C12orf74Q32Q52 190 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 LYPD1Q8N2G4 141 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 TRAV3A0A0B4J244 114 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 SIGLEC9Q9Y336 463 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 NDUFB1O75438 58 aa10.42□□□□□ -0.74
USP47-202ENST00000339865 IGKV1OR2-108A0A075B7D4 117 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 V9GYY9 64 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 Q0VG73 95 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 GFRA4Q9GZZ7 299 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 KLK9Q9UKQ9 250 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 GPR179Q6PRD1 2367 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 C4orf51C9J302 202 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 F8VRH5 84 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 TMEM200BQ69YZ2 307 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 SPACA3Q8IXA5 215 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 FBLN5Q9UBX5 448 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 ZNRF2Q8NHG8 242 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 IGKV2D-24A0A075B6R9 120 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 IGKV1D-8A0A087WSZ0 117 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 XCL1P47992 114 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 MRPL51Q4U2R6 128 aaKnown RBP10.41□□□□□ -0.74
USP47-202ENST00000339865 BRD3OSQ6XYD6 125 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 CTHRC1Q96CG8 243 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 REG4Q9BYZ8 158 aa10.41□□□□□ -0.74
USP47-202ENST00000339865 IGHV2-70P01814 119 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 CHCHD2Q9Y6H1 151 aaPredicted RBP10.4□□□□□ -0.74
USP47-202ENST00000339865 ABCA2Q9BZC7 2435 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 WIPF3A6NGB9 483 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 COL22A1Q8NFW1 1626 aaPredicted RBP10.4□□□□□ -0.74
USP47-202ENST00000339865 IGHV4OR15-8A0A075B7B6 117 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 A0A087WW49 117 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 IGHV1-3A0A0C4DH29 117 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 DEFB131AP59861 70 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 Q6ZWC4 215 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 J3QQQ9 107 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 CSRP2Q16527 193 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 LY96Q9Y6Y9 160 aa10.4□□□□□ -0.74
USP47-202ENST00000339865 RPL18AQ02543 176 aaKnown RBP10.4□□□□□ -0.75
USP47-202ENST00000339865 COX7B2Q8TF08 81 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms