RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 FAM213BQ8TBF2 198 aa11.5□□□□□ -0.57
CCDC28A-201ENST00000332797 RXFP4Q8TDU9 374 aa11.5□□□□□ -0.57
CCDC28A-201ENST00000332797 ODF3Q96PU9 254 aa11.5□□□□□ -0.57
CCDC28A-201ENST00000332797 TMPRSS5Q9H3S3 457 aa11.5□□□□□ -0.57
CCDC28A-201ENST00000332797 DIRC3C9JPN6 131 aa11.49□□□□□ -0.57
CCDC28A-201ENST00000332797 KIR3DS1Q14943 382 aa11.49□□□□□ -0.57
CCDC28A-201ENST00000332797 C9orf47Q6ZRZ4 202 aa11.49□□□□□ -0.57
CCDC28A-201ENST00000332797 SLC51BQ86UW2 128 aa11.49□□□□□ -0.57
CCDC28A-201ENST00000332797 LINC00477Q96M19 166 aa11.49□□□□□ -0.57
CCDC28A-201ENST00000332797 SLC25A5P05141 298 aaKnown RBP11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 RBMY1A1P0DJD3 496 aaKnown RBP11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 RBMY1CP0DJD4 496 aa11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 GNG5P63218 68 aa11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 RBMY1FQ15415 496 aaKnown RBP11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 IL17DQ8TAD2 202 aa11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 NEU1Q99519 415 aa11.48□□□□□ -0.57
CCDC28A-201ENST00000332797 RBAKDNA6NC62 111 aa11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 UBE2G2P60604 165 aa11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 GFI1BQ5VTD9 330 aa11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 ZFAND6Q6FIF0 208 aa11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 EIF5AL1Q6IS14 154 aaKnown RBP11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 DPPA3Q6W0C5 159 aa11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 Q8TAT8 98 aa11.47□□□□□ -0.57
CCDC28A-201ENST00000332797 SMIM9A6NGZ8 99 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 GGTLC3B5MD39 225 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 C3orf84H3BNL1 204 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 HBE1P02100 147 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 ZNF138P52744 262 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 GOLT1AQ6ZVE7 132 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 C5orf17Q8NAS9 161 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 SFT2D1Q8WV19 159 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 LINC01587Q99440 93 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 ZNF492Q9P255 531 aa11.46□□□□□ -0.57
CCDC28A-201ENST00000332797 A0A1B0GV50 99 aa11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 A0A1W2PRE2 83 aa11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 SUMO1P63165 101 aaKnown RBP11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 RRN3P1Q2M238 152 aa11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 TMEM256Q8N2U0 113 aa11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 ARL6IP6Q8N6S5 226 aa11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 FAM19A4Q96LR4 140 aa11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 YTHDF2Q9Y5A9 579 aaKnown RBP11.45□□□□□ -0.58
CCDC28A-201ENST00000332797 TRAV12-3A0A0B4J271 114 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 LOC102723971A0A1B0GUV8 181 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 ZNF705GA8MUZ8 300 aaPredicted RBP11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 EMP1P54849 157 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 PMS2P11Q13670 270 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 C11orf45Q8TAV5 145 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 MBD3L1Q8WWY6 194 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 C20orf144Q9BQM9 153 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 C7orf71A4D174 169 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 KLLNB2CW77 178 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 PRM2P04554 102 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 GPX1P07203 203 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 H2AFB1P0C5Y9 115 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 HTN1P15515 57 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 CRISP2P16562 243 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 RAB5CP51148 216 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 BTN1A1Q13410 526 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 NIPSNAP3BQ9BS92 247 aa11.44□□□□□ -0.58
CCDC28A-201ENST00000332797 CSMD3Q7Z407 3707 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 TRAV8-1A0A0A6YYK1 113 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 TMEM189A5PLL7 270 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 CXorf65A6NEN9 183 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 FAM74A7A6NL05 159 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 H7BYZ3 331 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 IFNA7P01567 189 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 TCRAP04437 139 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 RNASE4P34096 147 aaKnown RBP11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 SULT1A2P50226 295 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 NANOS2P60321 138 aaKnown RBP11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 CASC10Q5T4H9 136 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 PRR9Q5T870 116 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 ZFAND2AQ8N6M9 145 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 EPDR1Q9UM22 224 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 BOLA1Q9Y3E2 137 aa11.43□□□□□ -0.58
CCDC28A-201ENST00000332797 SERTM2A0A1B0GWG4 89 aa11.42□□□□□ -0.58
CCDC28A-201ENST00000332797 K7EQM0 130 aa11.42□□□□□ -0.58
CCDC28A-201ENST00000332797 NMBP08949 121 aa11.42□□□□□ -0.58
CCDC28A-201ENST00000332797 TAS2R60P59551 318 aa11.42□□□□□ -0.58
CCDC28A-201ENST00000332797 SGK494Q96LW2 274 aa11.42□□□□□ -0.58
CCDC28A-201ENST00000332797 CELA1Q9UNI1 258 aa11.42□□□□□ -0.58
CCDC28A-201ENST00000332797 TRBV7-9A0A0J9YWB2 115 aa11.41□□□□□ -0.58
CCDC28A-201ENST00000332797 AZU1P20160 251 aa11.41□□□□□ -0.58
CCDC28A-201ENST00000332797 CYB561D1Q8N8Q1 229 aa11.41□□□□□ -0.58
CCDC28A-201ENST00000332797 ATG101Q9BSB4 218 aa11.41□□□□□ -0.58
CCDC28A-201ENST00000332797 NKX6-2Q9C056 277 aaPredicted RBP11.41□□□□□ -0.58
CCDC28A-201ENST00000332797 LENEPQ9Y5L5 61 aa11.41□□□□□ -0.58
CCDC28A-201ENST00000332797 CST9LP1Q5W188 147 aa11.4□□□□□ -0.58
CCDC28A-201ENST00000332797 STARD9Q9P2P6 4700 aa11.39□□□□□ -0.59
CCDC28A-201ENST00000332797 PEX7O00628 323 aa11.39□□□□□ -0.59
CCDC28A-201ENST00000332797 PAGE4O60829 102 aa11.39□□□□□ -0.59
CCDC28A-201ENST00000332797 ARL2-SNX15V9GYD0 113 aa11.39□□□□□ -0.59
CCDC28A-201ENST00000332797 ZNF324O75467 553 aaPredicted RBP11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 SPART-AS1P0CW21 52 aa11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 ATP5G3P48201 142 aa11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 FAM222AQ5U5X8 452 aa11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 ALKAL2Q6UX46 152 aa11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 ZNF767PQ75MW2 155 aa11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 CCDC28AQ8IWP9 274 aa11.38□□□□□ -0.59
CCDC28A-201ENST00000332797 TMEM75Q8N9X5 138 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms