RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 HIGD1AQ9Y241 93 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 ZANQ9Y493 2812 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 CENPVL3A0A0U1RRI6 287 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 A0A1B0GW15 77 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 K7ERU9 68 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 SAA4P35542 130 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 PAX8Q06710 450 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 LOXL1Q08397 574 aaPredicted RBP12.42□□□□□ -0.42
USH1C-202ENST00000318024 BOD1L2Q8IYS8 172 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 TMEM75Q8N9X5 138 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 SLC25A39Q9BZJ4 359 aaPredicted RBP12.42□□□□□ -0.42
USH1C-202ENST00000318024 U3KQK5 164 aa12.42□□□□□ -0.42
USH1C-202ENST00000318024 IGHV3-21A0A0B4J1V1 117 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 H3BRM9 83 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 SNAI2O43623 268 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 CSN1S1P47710 185 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 PLGLAQ15195 96 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 SRSF12Q8WXF0 261 aaKnown RBP12.41□□□□□ -0.42
USH1C-202ENST00000318024 SIGLEC9Q9Y336 463 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 C9orf118A6NHY6 69 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 RPL27AP46776 148 aaKnown RBP12.41□□□□□ -0.42
USH1C-202ENST00000318024 DSCR9P59020 149 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 OR1N2Q8NGR9 330 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 TMEM190Q8WZ59 177 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 AJUBAQ96IF1 538 aa12.41□□□□□ -0.42
USH1C-202ENST00000318024 GCN1Q92616 2671 aaKnown RBP12.4□□□□□ -0.42
USH1C-202ENST00000318024 TEX22C9J3V5 150 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 SAP30O75446 220 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 MSMBP08118 114 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 LGALS9BQ3B8N2 356 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 LGALS9CQ6DKI2 356 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 BRD3OSQ6XYD6 125 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 PPP1R27Q86WC6 154 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 RABAC1Q9UI14 185 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 F11RQ9Y624 299 aaKnown RBP12.4□□□□□ -0.42
USH1C-202ENST00000318024 ABCA1O95477 2261 aa12.4□□□□□ -0.42
USH1C-202ENST00000318024 IFI27P40305 119 aaPredicted RBP12.39□□□□□ -0.43
USH1C-202ENST00000318024 DEFB113Q30KQ7 82 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 FA2HQ7L5A8 372 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 FER1L6-AS1Q8NA97 138 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 HIF1ANQ9NWT6 349 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 TRBV19A0A075B6N1 114 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 RNF223E7ERA6 249 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 MINOS1Q5TGZ0 78 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 SIGLEC15Q6ZMC9 328 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 ADAMTSL5Q6ZMM2 481 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 MINOS1-NBL1R4GNA1 71 aa12.39□□□□□ -0.43
USH1C-202ENST00000318024 TRAV40A0A0B4J280 105 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 GAGE10A6NGK3 116 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 I3L2K1 104 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 NPFFO15130 113 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 MRPS12O15235 138 aaKnown RBP12.38□□□□□ -0.43
USH1C-202ENST00000318024 PRSS3P2Q8NHM4 247 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 C17orf77Q96MU5 243 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 MEGF9Q9H1U4 602 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 SIGLEC8Q9NYZ4 499 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 NCBP2LA6PVI3 153 aaKnown RBP12.38□□□□□ -0.43
USH1C-202ENST00000318024 IGKV1-17P01599 117 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 SLC25A16P16260 332 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 LYZP61626 148 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 Q6AWC8 147 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 CCDC144NLQ6NUI1 221 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 PSG8Q9UQ74 426 aa12.38□□□□□ -0.43
USH1C-202ENST00000318024 B4DSR2 109 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 SIVA1O15304 175 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 IGHV4-38-2P0DP08 117 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 ASCL2Q99929 193 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 TIMM8BQ9Y5J9 83 aaPredicted RBP12.37□□□□□ -0.43
USH1C-202ENST00000318024 K7EP34 96 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 NBR2O15453 112 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 PSG3Q16557 428 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 Q5PR19 223 aa12.37□□□□□ -0.43
USH1C-202ENST00000318024 A0A096LNT2 108 aa12.36□□□□□ -0.43
USH1C-202ENST00000318024 G3V4G9 280 aa12.36□□□□□ -0.43
USH1C-202ENST00000318024 H3BRN7 92 aa12.36□□□□□ -0.43
USH1C-202ENST00000318024 SMAD7O15105 426 aaKnown RBP12.36□□□□□ -0.43
USH1C-202ENST00000318024 AVPP01185 164 aa12.36□□□□□ -0.43
USH1C-202ENST00000318024 NEGR1Q7Z3B1 354 aa12.36□□□□□ -0.43
USH1C-202ENST00000318024 SHANK2-AS3Q9BTD1 123 aa12.36□□□□□ -0.43
USH1C-202ENST00000318024 CNIH1O95406 144 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 HSD52Q0P140 79 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 FAM104BQ5XKR9 115 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 LYPD1Q8N2G4 141 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 OR9G4Q8NGQ1 327 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 RNF5Q99942 180 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 D6R8Y8 96 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 KIR3DS1Q14943 382 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 GTF2H5Q6ZYL4 71 aa12.35□□□□□ -0.43
USH1C-202ENST00000318024 BEX4Q9NWD9 120 aaPredicted RBP12.35□□□□□ -0.43
USH1C-202ENST00000318024 IGHV1-69DA0A0B4J2H0 117 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 A6NDN8 102 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 OOSP1A8MZH6 123 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 IGHV1-69P01742 117 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 OR8A1Q8NGG7 326 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 NPFFR1Q9GZQ6 430 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 TGFAP01135 160 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 NPBQ8NG41 125 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 Q96MF0 132 aa12.34□□□□□ -0.43
USH1C-202ENST00000318024 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.33□□□□□ -0.43
USH1C-202ENST00000318024 TMEM213A2RRL7 107 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms