RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ZNF503Q96F45 646 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 UBE2L3P68036 154 aaKnown RBP11.51□□□□□ -0.57
LSM1-201ENST00000311351 FAM210BQ96KR6 192 aa11.51□□□□□ -0.57
LSM1-201ENST00000311351 AGPAT4-IT1Q9H0P7 198 aa11.51□□□□□ -0.57
LSM1-201ENST00000311351 NOP10Q9NPE3 64 aaKnown RBP11.51□□□□□ -0.57
LSM1-201ENST00000311351 NACAE9PAV3 2078 aa11.5□□□□□ -0.57
LSM1-201ENST00000311351 BTN1A1Q13410 526 aa11.5□□□□□ -0.57
LSM1-201ENST00000311351 POM121L12Q8N7R1 296 aa11.5□□□□□ -0.57
LSM1-201ENST00000311351 INO80EQ8NBZ0 244 aaPredicted RBP11.5□□□□□ -0.57
LSM1-201ENST00000311351 VGLL1Q99990 258 aa11.5□□□□□ -0.57
LSM1-201ENST00000311351 TIMM8BQ9Y5J9 83 aaPredicted RBP11.5□□□□□ -0.57
LSM1-201ENST00000311351 C7orf71A4D174 169 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 CD300CQ08708 224 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 ZNF266Q14584 549 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 PRR9Q5T870 116 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 ZNF493Q6ZR52 646 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 FAM19A4Q96LR4 140 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 AQP10Q96PS8 301 aa11.49□□□□□ -0.57
LSM1-201ENST00000311351 KLLNB2CW77 178 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 F5H768 121 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 SLC25A5P05141 298 aaKnown RBP11.48□□□□□ -0.57
LSM1-201ENST00000311351 ATP5G1P05496 136 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 ATP5G3P48201 142 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 RAB2AP61019 212 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 KHDC3LQ587J8 217 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 C9orf47Q6ZRZ4 202 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 UBE2DNLQ8IWF7 75 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 CCDC28AQ8IWP9 274 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 OR2T35Q8NGX2 323 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 Q8TAT8 98 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 LINC00477Q96M19 166 aa11.48□□□□□ -0.57
LSM1-201ENST00000311351 RANP62826 216 aaKnown RBP11.47□□□□□ -0.57
LSM1-201ENST00000311351 Q5BKY6 102 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 TMEM78Q5T7P6 136 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 ZFAND2AQ8N6M9 145 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 PYGO2Q9BRQ0 406 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 Q9H3A6 140 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 DNAH2Q9P225 4427 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 HECTD4Q9Y4D8 3996 aa11.47□□□□□ -0.57
LSM1-201ENST00000311351 CBY3A6NI87 242 aa11.46□□□□□ -0.57
LSM1-201ENST00000311351 CRISP2P16562 243 aa11.46□□□□□ -0.57
LSM1-201ENST00000311351 RNASE4P34096 147 aaKnown RBP11.46□□□□□ -0.57
LSM1-201ENST00000311351 TAS2R45P59539 299 aa11.46□□□□□ -0.57
LSM1-201ENST00000311351 HSD17B11Q8NBQ5 300 aa11.46□□□□□ -0.57
LSM1-201ENST00000311351 ZNF492Q9P255 531 aa11.46□□□□□ -0.57
LSM1-201ENST00000311351 FXYD6-FXYD2A0A087WZ82 144 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 GAGE12BA1L429 117 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 SNURFLB1AK76 121 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 M0R2N4 97 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 HMGB3O15347 200 aaKnown RBP11.45□□□□□ -0.58
LSM1-201ENST00000311351 ZNF324O75467 553 aaPredicted RBP11.45□□□□□ -0.58
LSM1-201ENST00000311351 GAGE7O76087 117 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 GAGE12FP0CL80 117 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 GAGE12GP0CL81 117 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 GAGE12IP0CL82 117 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 M6PRP20645 277 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 ACOT6Q3I5F7 207 aaPredicted RBP11.45□□□□□ -0.58
LSM1-201ENST00000311351 Q6ZQT7 251 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 LINC00612Q8N6U2 182 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 C15orf53Q8NAA6 179 aa11.45□□□□□ -0.58
LSM1-201ENST00000311351 IGLV2-18A0A075B6J9 118 aa11.44□□□□□ -0.58
LSM1-201ENST00000311351 GPX1P07203 203 aa11.44□□□□□ -0.58
LSM1-201ENST00000311351 ZNF138P52744 262 aa11.44□□□□□ -0.58
LSM1-201ENST00000311351 FAT2Q9NYQ8 4349 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 A0A1W2PPV4 95 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 NUDT3O95989 172 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 CSN1S1P47710 185 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 Q6ZTI0 123 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 LYPD1Q8N2G4 141 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 C11orf72Q8NBR9 251 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 OR10G4Q8NGN3 311 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 OR10G9Q8NGN4 311 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 OR10G7Q8NGN6 311 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 HYLS1Q96M11 299 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 GSN-AS1Q9NRJ2 163 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 RPH3ALQ9UNE2 315 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 TNFSF18Q9UNG2 199 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 DNAH17Q9UFH2 4485 aa11.43□□□□□ -0.58
LSM1-201ENST00000311351 BORCS7-ASMTA0A0B4J1R7 106 aa11.42□□□□□ -0.58
LSM1-201ENST00000311351 RNF222A6NCQ9 220 aa11.42□□□□□ -0.58
LSM1-201ENST00000311351 ATP6V0CP27449 155 aa11.42□□□□□ -0.58
LSM1-201ENST00000311351 EIF4E3Q8N5X7 224 aaKnown RBP11.42□□□□□ -0.58
LSM1-201ENST00000311351 LINC00467Q9BRT7 94 aa11.42□□□□□ -0.58
LSM1-201ENST00000311351 SH3BGRL3Q9H299 93 aa11.42□□□□□ -0.58
LSM1-201ENST00000311351 RBAKDNA6NC62 111 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 DIRC3C9JPN6 131 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 NMBP08949 121 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 ARL14EPLP0DKL9 152 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 HOXA5P20719 270 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 CDC34P49427 236 aaPredicted RBP11.41□□□□□ -0.58
LSM1-201ENST00000311351 DAZ2Q13117 558 aaKnown RBP11.41□□□□□ -0.58
LSM1-201ENST00000311351 RNF212Q495C1 297 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 PQLC2Q6ZP29 291 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 ZNF680Q8NEM1 530 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 OR2G3Q8NGZ4 309 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 PSMG3Q9BT73 122 aaPredicted RBP11.41□□□□□ -0.58
LSM1-201ENST00000311351 TMPRSS5Q9H3S3 457 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 OTORQ9NRC9 128 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 TP53TG3Q9ULZ0 132 aa11.41□□□□□ -0.58
LSM1-201ENST00000311351 TAAR5O14804 337 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms