RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 TMEM14BQ9NUH8 114 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 TRAV25A0A0B4J276 109 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 RBM3P98179 157 aaKnown RBP12.57□□□□□ -0.4
HCFC1-201ENST00000310441 K7EP34 96 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 YPEL3P61236 119 aaPredicted RBP12.56□□□□□ -0.4
HCFC1-201ENST00000310441 SHISA9B4DS77 424 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 NDPQ00604 133 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 PYY3Q5JQD4 70 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 VSIRQ9H7M9 311 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 COX8AP10176 69 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 FAM104BQ5XKR9 115 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 HLA-DRB4P13762 266 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 HLA-DRB4X5D2U9 266 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 NOTCH4Q99466 2003 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 DEFB130BP0DP73 79 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 DEFB130AP0DP74 79 aa12.56□□□□□ -0.4
HCFC1-201ENST00000310441 F5H768 121 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 CDKN1BP46527 198 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 F8VRH5 84 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 FOXF2Q12947 444 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 C2orf66Q6UXQ4 117 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 A0A1W2PPM0 123 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 WFDC12Q8WWY7 111 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 VWC2Q2TAL6 325 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 NDUFS5O43920 106 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 AZU1P20160 251 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 CHKB-CPT1BH3BT56 60 aa12.55□□□□□ -0.4
HCFC1-201ENST00000310441 IGHV3-53P01767 116 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 LGALS9BQ3B8N2 356 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 LGALS9CQ6DKI2 356 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 C3orf56Q8N813 242 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 C20orf78Q9BR46 151 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 NAA38Q9BRA0 125 aaKnown RBP12.54□□□□□ -0.4
HCFC1-201ENST00000310441 ARMS2P0C7Q2 107 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 SMIM20Q8N5G0 67 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 NBL1P41271 181 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 K7EP13 123 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 PSPNO60542 156 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 ORMDL1Q9P0S3 153 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 TMEM14CQ9P0S9 112 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 SPATA25Q9BR10 227 aa12.54□□□□□ -0.4
HCFC1-201ENST00000310441 IGKV1-5P01602 117 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 GGNQ86UU5 652 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 CFHR4Q92496 578 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 GAGE12JA6NER3 117 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 GAGE4Q13068 117 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 GAGE5Q13069 117 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 GAGE6Q13070 117 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 NTN3O00634 580 aaPredicted RBP12.53□□□□□ -0.4
HCFC1-201ENST00000310441 RHOHQ15669 191 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 PYGO2Q9BRQ0 406 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 GAGE12HA6NDE8 117 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 LHBP01229 141 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 NTF4P34130 210 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 ZNF134P52741 427 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 ZNF664Q8N3J9 261 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 RNF152Q8N8N0 203 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 CYTL1Q9NRR1 136 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 MSRB2Q9Y3D2 182 aa12.53□□□□□ -0.4
HCFC1-201ENST00000310441 C15orf62A8K5M9 175 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 PRSS47A8MTI9 375 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 SPACA3Q8IXA5 215 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 CARD19Q96LW7 228 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 SAA4P35542 130 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 MP68P56378 58 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 NDUFA12Q9UI09 145 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 LINC01619G3V211 115 aa12.52□□□□□ -0.4
HCFC1-201ENST00000310441 SMIM27A0A1W2PRY6 76 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 CGB3P0DN86 165 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 RNASE2P10153 161 aaKnown RBP12.52□□□□□ -0.41
HCFC1-201ENST00000310441 HERV-K104P63124 156 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 TEX48A0A1B0GUV7 120 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 HS3ST6Q96QI5 342 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 FAM231DQ6ZW35 169 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 SH2D6Q7Z4S9 175 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 C18orf32Q8TCD1 76 aa12.52□□□□□ -0.41
HCFC1-201ENST00000310441 ANKHD1Q8IWZ3 2542 aaKnown RBP12.52□□□□□ -0.41
HCFC1-201ENST00000310441 SDHAF1A6NFY7 115 aa12.51□□□□□ -0.41
HCFC1-201ENST00000310441 TGFBR3LH3BV60 316 aa12.51□□□□□ -0.41
HCFC1-201ENST00000310441 SMIM2Q9BVW6 85 aa12.51□□□□□ -0.41
HCFC1-201ENST00000310441 IGHG2P01859 326 aa12.51□□□□□ -0.41
HCFC1-201ENST00000310441 PFN2P35080 140 aa12.51□□□□□ -0.41
HCFC1-201ENST00000310441 SMKR1H3BMG3 65 aa12.51□□□□□ -0.41
HCFC1-201ENST00000310441 REG4Q9BYZ8 158 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 IGHV1OR15-1A0A075B7D0 117 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 F6UB75 175 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 GAGE7O76087 117 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 GAGE12FP0CL80 117 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 GAGE12GP0CL81 117 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 GAGE12IP0CL82 117 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 UBE2E1P51965 193 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 ZFP36L1Q07352 338 aaKnown RBP12.5□□□□□ -0.41
HCFC1-201ENST00000310441 CGB7P0DN87 165 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 FXYD7P58549 80 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 MORN5Q5VZ52 161 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 Q6ZVH6 145 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 CD177Q8N6Q3 437 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 GAFA1Q96PS6 74 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 UBE2E2Q96LR5 201 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 ATG2AQ2TAZ0 1938 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms