RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TFF1P04155 84 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 C5orf47Q569G3 176 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 SLAQ13239 276 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 TRBV7-1A0A0A6YYK4 115 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 C17orf100A8MU93 164 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 SHISA9B4DS77 424 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV1-18A0A0C4DH31 117 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 CFHR2P36980 270 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 NKAPP1Q8N9T2 125 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 CARD19Q96LW7 228 aa8.02□□□□□ -1.13
COL6A3-201ENST00000295550 CEND1Q8N111 149 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 HAMPP81172 84 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 ANKRD29Q8N6D5 301 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 TMEM141Q96I45 108 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 LILRA1O75019 489 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV2-70P01814 119 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 NSUN5P1Q3KNT7 163 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 BOD1L2Q8IYS8 172 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 RFNGQ9Y644 331 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 CLPSL1A2RUU4 121 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 NDUFC2O95298 119 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 SPSB3Q6PJ21 355 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 TP53TG1Q9Y2A0 90 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 THAP8Q8NA92 274 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 FGF6P10767 208 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 Q0VG73 95 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 WNT2P09544 360 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 RPL35AP18077 110 aaKnown RBP8.01□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV3-53P01767 116 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 PRSS22Q9GZN4 317 aa8.01□□□□□ -1.13
COL6A3-201ENST00000295550 C20orf204Q6ZNR8 217 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 TRAV25A0A0B4J276 109 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 NDPQ00604 133 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 TMEM219Q86XT9 240 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 OR11H6Q8NGC7 330 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 FNDC10F2Z333 226 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 HLA-DMBP28068 263 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 Q6ZWC4 215 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 HAPLN4Q86UW8 402 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 MDS2Q8NDY4 140 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 PSPNO60542 156 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 MMP23AO75900 390 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 PRB1P04280 392 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 CSRP2Q16527 193 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 TMEM75Q8N9X5 138 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 C18orf32Q8TCD1 76 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 C9JQL5 133 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 CD177Q8N6Q3 437 aa8□□□□□ -1.13
COL6A3-201ENST00000295550 FAM27E3Q08E93 113 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 ZNF524Q96C55 264 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 HIVEP2P31629 2446 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV2-26A0A0B4J1V2 119 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 IGKV1-6A0A0C4DH72 117 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 FOXF2Q12947 444 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 F8P00451 2351 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 WISP1O95388 367 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 COX8AP10176 69 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 LRP4O75096 1905 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 B5MCH6 92 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 SAP30O75446 220 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 PRDM6Q9NQX0 595 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 LINC00473A8K010 186 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 IGLV3-1P01715 115 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 SLC25A16P16260 332 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 LINC00477Q96M19 166 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 TRPT1Q86TN4 253 aaKnown RBP7.99□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV1-24A0A0C4DH33 117 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 J3KT08 172 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 LYPD6BQ8NI32 183 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 LYPD1Q8N2G4 141 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 C10orf55Q5SWW7 151 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 BVES-AS1Q5T3Y7 98 aa7.99□□□□□ -1.13
COL6A3-201ENST00000295550 H3BMG7 143 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 RNF166Q96A37 237 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-201ENST00000295550 C15orf62A8K5M9 175 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 NBL1P41271 181 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 A0A1B0GWJ7 208 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 IGLC2P0DOY2 106 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 IGLC3P0DOY3 106 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 IL17RELQ6ZVW7 336 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 PIEZO2Q9H5I5 2752 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 TRAV13-2A0A0B4J235 113 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 THBDP07204 575 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 PDE6HQ13956 83 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 ARMS2P0C7Q2 107 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 CDKN1BP46527 198 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 FOXG1P55316 489 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-201ENST00000295550 PRO1854Q9UHT4 67 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 TRAV3A0A0B4J244 114 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 CMC4P56277 68 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-201ENST00000295550 C9orf139Q6ZV77 190 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 TMEM243Q9BU79 118 aa7.98□□□□□ -1.13
COL6A3-201ENST00000295550 SVIPQ8NHG7 77 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 C8orf49Q96NF6 230 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 A0A1W2PPI3 338 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 NDUFS5O43920 106 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 I3L3M4 83 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 A0A0G2JRQ6 117 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 RS1O15537 224 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV1-46P01743 117 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms