RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 RASL11AQ6T310 242 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 TRAV9-2A0A087WT02 112 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 GATA1P15976 413 aaPredicted RBP12.92□□□□□ -0.34
VPS54-201ENST00000272322 ZFP30Q9Y2G7 519 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 IL17RELQ6ZVW7 336 aa12.91□□□□□ -0.34
VPS54-201ENST00000272322 KLHDC1Q8N7A1 406 aa12.91□□□□□ -0.34
VPS54-201ENST00000272322 PRR25Q96S07 402 aa12.91□□□□□ -0.34
VPS54-201ENST00000272322 TCF21O43680 179 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 KLF5Q13887 457 aaPredicted RBP12.9□□□□□ -0.34
VPS54-201ENST00000272322 TTC9CQ8N5M4 171 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 GLMPQ8WWB7 406 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 SIRPDQ9H106 197 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 TRAV30A0A087WSZ9 112 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 FOXE3Q13461 319 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 TRBV12-3P01733 135 aa12.9□□□□□ -0.34
VPS54-201ENST00000272322 CKS2P33552 79 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 MPV17L2Q567V2 206 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 MAP1LC3CQ9BXW4 147 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 MTORP42345 2549 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 IGHV2-70DA0A0C4DH43 119 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 EFNA4P52798 201 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 FAM162BQ5T6X4 162 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 NPIPB6E9PJ23 425 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 OR5AL1P0C617 328 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 LMO4P61968 165 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 ZNF124Q15973 351 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 COL5A1-AS1Q5SY13 56 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 PRELID3AQ96N28 172 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 GOLT1BQ9Y3E0 138 aa12.89□□□□□ -0.35
VPS54-201ENST00000272322 HAX1O00165 279 aa12.88□□□□□ -0.35
VPS54-201ENST00000272322 ACANP16112 2415 aa12.88□□□□□ -0.35
VPS54-201ENST00000272322 A0A087X0K7 114 aa12.88□□□□□ -0.35
VPS54-201ENST00000272322 CENPVL3A0A0U1RRI6 287 aa12.88□□□□□ -0.35
VPS54-201ENST00000272322 CT83Q5H943 113 aa12.88□□□□□ -0.35
VPS54-201ENST00000272322 PRSS57Q6UWY2 283 aa12.88□□□□□ -0.35
VPS54-201ENST00000272322 NUDT3O95989 172 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 IGHG4P01861 327 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 IGF1P05019 195 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 UFC1Q9Y3C8 167 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 HSBP1L1C9JCN9 74 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 NPFFO15130 113 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 ITLN2Q8WWU7 325 aaPredicted RBP12.87□□□□□ -0.35
VPS54-201ENST00000272322 IGHV4-61A0A0C4DH41 118 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 IGHV4-39P01824 125 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 Q6ZS46 218 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 DTX2Q86UW9 622 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 CCDC140Q96MF4 163 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 RNF24Q9Y225 148 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 FBN2P35556 2912 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 TEX15Q9BXT5 2789 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 MXRA5Q9NR99 2828 aa12.87□□□□□ -0.35
VPS54-201ENST00000272322 IGHV4-38-2P0DP08 117 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 FER1L6-AS1Q8NA97 138 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 TRAV26-2A0A0B4J265 109 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 GFRA4Q9GZZ7 299 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 SIGLEC8Q9NYZ4 499 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 NF1P21359 2839 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 CBY3A6NI87 242 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 M0QZK8 103 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 DLEU1O43261 78 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 NPYP01303 97 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 TRGV3P03979 118 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 UBE2E1P51965 193 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 MRPL51Q4U2R6 128 aaKnown RBP12.86□□□□□ -0.35
VPS54-201ENST00000272322 Q8N6K4 173 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 NDFIP1Q9BT67 221 aa12.86□□□□□ -0.35
VPS54-201ENST00000272322 GOSR1O95249 250 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 BLCAPP62952 87 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 SMIM12Q96EX1 92 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 C20orf202A1L168 122 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 OVOL3O00110 214 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 PSG9Q00887 426 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 TMEM95Q3KNT9 176 aa12.85□□□□□ -0.35
VPS54-201ENST00000272322 F6UB75 175 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 BUB3O43684 328 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 AJUBAQ96IF1 538 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 NAA38Q9BRA0 125 aaKnown RBP12.84□□□□□ -0.35
VPS54-201ENST00000272322 SRSF8Q9BRL6 282 aaKnown RBP12.84□□□□□ -0.35
VPS54-201ENST00000272322 TMEM191AQ9H0A3 160 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 MINOS1Q5TGZ0 78 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 UNQ9165/PRO28630Q6UXU0 137 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 ZNF502Q8TBZ5 544 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 KLK15Q9H2R5 256 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 MINOS1-NBL1R4GNA1 71 aa12.84□□□□□ -0.35
VPS54-201ENST00000272322 PF4V1P10720 104 aa12.83□□□□□ -0.35
VPS54-201ENST00000272322 CACNG7P62955 275 aa12.83□□□□□ -0.35
VPS54-201ENST00000272322 LYPD1Q8N2G4 141 aa12.83□□□□□ -0.36
VPS54-201ENST00000272322 C16orf92Q96LL3 132 aa12.83□□□□□ -0.36
VPS54-201ENST00000272322 AGPAT4-IT1Q9H0P7 198 aa12.83□□□□□ -0.36
VPS54-201ENST00000272322 ATP5J2P56134 94 aa12.83□□□□□ -0.36
VPS54-201ENST00000272322 TM4SF20Q53R12 229 aa12.83□□□□□ -0.36
VPS54-201ENST00000272322 CHCHD1Q96BP2 118 aaKnown RBP12.83□□□□□ -0.36
VPS54-201ENST00000272322 KIR3DS1Q14943 382 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 ORMDL3Q8N138 153 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 H3BUX3 64 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 FAM104BQ5XKR9 115 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 S100A7AQ86SG5 101 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 AGRNO00468 2067 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 EDN2P20800 178 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 PAX2Q02962 417 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms