RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 DPM3Q9P2X0 92 aa21.42■■□□□ 1.02
CBX4-201ENST00000269397 IGLV11-55A0A075B6I3 123 aa21.41■■□□□ 1.02
CBX4-201ENST00000269397 NCBP2LA6PVI3 153 aaKnown RBP21.41■■□□□ 1.02
CBX4-201ENST00000269397 CD3EP07766 207 aa21.41■■□□□ 1.02
CBX4-201ENST00000269397 CSTL1Q9H114 145 aa21.41■■□□□ 1.02
CBX4-201ENST00000269397 C21orf62Q9NYP8 219 aa21.41■■□□□ 1.02
CBX4-201ENST00000269397 SMAD5-AS1Q9Y6J3 95 aa21.41■■□□□ 1.02
CBX4-201ENST00000269397 NBASA2RRP1 2371 aa21.4■■□□□ 1.02
CBX4-201ENST00000269397 GATA1P15976 413 aaPredicted RBP21.4■■□□□ 1.02
CBX4-201ENST00000269397 OR2K2Q8NGT1 345 aa21.4■■□□□ 1.02
CBX4-201ENST00000269397 IGKV2D-26A0A0A0MRZ7 120 aa21.4■■□□□ 1.02
CBX4-201ENST00000269397 K7EP34 96 aa21.4■■□□□ 1.02
CBX4-201ENST00000269397 IGHG4P01861 327 aa21.4■■□□□ 1.02
CBX4-201ENST00000269397 ERCC8Q13216 396 aa21.4■■□□□ 1.02
CBX4-201ENST00000269397 C5orf64Q2M2E5 130 aa21.39■■□□□ 1.01
CBX4-201ENST00000269397 LEPP41159 167 aa21.39■■□□□ 1.01
CBX4-201ENST00000269397 RNF185Q96GF1 192 aa21.39■■□□□ 1.01
CBX4-201ENST00000269397 IGLC6P0CF74 106 aa21.38■■□□□ 1.01
CBX4-201ENST00000269397 RPL7P18124 248 aaKnown RBP21.38■■□□□ 1.01
CBX4-201ENST00000269397 ZNF672Q499Z4 452 aaPredicted RBP21.38■■□□□ 1.01
CBX4-201ENST00000269397 OR4X2Q8NGF9 303 aa21.37■■□□□ 1.01
CBX4-201ENST00000269397 ARPC1AQ92747 370 aa21.37■■□□□ 1.01
CBX4-201ENST00000269397 NDUFA3O95167 84 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 SPTA1P02549 2419 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 GCSHP23434 173 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 S100A7AQ86SG5 101 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 NPBQ8NG41 125 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 TMEM190Q8WZ59 177 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 MAP1LC3AQ9H492 121 aa21.36■■□□□ 1.01
CBX4-201ENST00000269397 BMI1P35226 326 aa21.35■■□□□ 1.01
CBX4-201ENST00000269397 SPCS1Q9Y6A9 102 aa21.35■■□□□ 1.01
CBX4-201ENST00000269397 PRAC2D3DTV9 90 aa21.35■■□□□ 1.01
CBX4-201ENST00000269397 PRSS1P07477 247 aa21.35■■□□□ 1.01
CBX4-201ENST00000269397 GRNP28799 593 aaKnown RBP21.35■■□□□ 1.01
CBX4-201ENST00000269397 SIVA1O15304 175 aa21.34■■□□□ 1.01
CBX4-201ENST00000269397 DYNAPQ8N1N2 210 aa21.34■■□□□ 1.01
CBX4-201ENST00000269397 COL25A1Q9BXS0 654 aaPredicted RBP21.34■■□□□ 1.01
CBX4-201ENST00000269397 A0A1W2PPM0 123 aa21.34■■□□□ 1.01
CBX4-201ENST00000269397 K7EMI3 77 aa21.34■■□□□ 1.01
CBX4-201ENST00000269397 CTSGP08311 255 aa21.34■■□□□ 1.01
CBX4-201ENST00000269397 RNF182Q8N6D2 247 aa21.34■■□□□ 1.01
CBX4-201ENST00000269397 CEP295Q9C0D2 2601 aa21.33■■□□□ 1.01
CBX4-201ENST00000269397 TNFRSF6BO95407 300 aa21.33■■□□□ 1.01
CBX4-201ENST00000269397 FXYD2P54710 66 aa21.33■■□□□ 1.01
CBX4-201ENST00000269397 IGHV3-66A0A0C4DH42 116 aa21.32■■□□□ 1
CBX4-201ENST00000269397 ODF1Q14990 250 aa21.32■■□□□ 1
CBX4-201ENST00000269397 COX8CQ7Z4L0 72 aa21.32■■□□□ 1
CBX4-201ENST00000269397 K7ERJ3 54 aa21.32■■□□□ 1
CBX4-201ENST00000269397 ZNF562Q6V9R5 426 aa21.32■■□□□ 1
CBX4-201ENST00000269397 HHLA3Q9XRX5 114 aa21.32■■□□□ 1
CBX4-201ENST00000269397 IGHV3OR16-13A0A075B7E8 117 aa21.31■■□□□ 1
CBX4-201ENST00000269397 IGHV3-74A0A0B4J1X5 117 aa21.31■■□□□ 1
CBX4-201ENST00000269397 GTSCR1Q86UQ5 136 aa21.31■■□□□ 1
CBX4-201ENST00000269397 LY6G5BQ8NDX9 201 aa21.31■■□□□ 1
CBX4-201ENST00000269397 OR11H6Q8NGC7 330 aa21.31■■□□□ 1
CBX4-201ENST00000269397 FOXC2Q99958 501 aa21.3■■□□□ 1
CBX4-201ENST00000269397 CEACAM3P40198 252 aa21.3■■□□□ 1
CBX4-201ENST00000269397 IL17RELQ6ZVW7 336 aa21.3■■□□□ 1
CBX4-201ENST00000269397 TMEM158Q8WZ71 300 aa21.3■■□□□ 1
CBX4-201ENST00000269397 HRNRQ86YZ3 2850 aaPredicted RBP21.29■■□□□ 1
CBX4-201ENST00000269397 FABP5P3A8MUU1 101 aa21.29■■□□□ 1
CBX4-201ENST00000269397 G3V4G9 280 aa21.29■■□□□ 1
CBX4-201ENST00000269397 TTC9CQ8N5M4 171 aa21.29■■□□□ 1
CBX4-201ENST00000269397 FAM90A27PA6NNH2 459 aa21.29■■□□□ 1
CBX4-201ENST00000269397 FCER1GP30273 86 aa21.29■■□□□ 1
CBX4-201ENST00000269397 FBLL1A6NHQ2 334 aaKnown RBP21.28■■□□□ 1
CBX4-201ENST00000269397 SAMD5Q5TGI4 173 aa21.28■■□□□ 1
CBX4-201ENST00000269397 ZNF48Q96MX3 618 aaPredicted RBP21.28■■□□□ 1
CBX4-201ENST00000269397 PSMG3-AS1Q96PY0 264 aa21.28■■□□□ 1
CBX4-201ENST00000269397 PTPRZ1P23471 2315 aaPredicted RBP21.27■■□□□ 1
CBX4-201ENST00000269397 TRGV3P03979 118 aa21.27■■□□□ 1
CBX4-201ENST00000269397 SMIM13P0DJ93 91 aa21.27■■□□□ 1
CBX4-201ENST00000269397 DTX2Q86UW9 622 aa21.27■■□□□ 1
CBX4-201ENST00000269397 FABP2P12104 132 aa21.26■□□□□ 0.99
CBX4-201ENST00000269397 CHAC1Q9BUX1 264 aa21.26■□□□□ 0.99
CBX4-201ENST00000269397 TRAV26-2A0A0B4J265 109 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 IGKCP01834 107 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 NEGR1Q7Z3B1 354 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 NPFFR1Q9GZQ6 430 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 IGHV3-49A0A0A0MS15 119 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 ZC2HC1BQ5TFG8 222 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 TMEM160Q9NX00 188 aa21.25■□□□□ 0.99
CBX4-201ENST00000269397 Q6ZQT7 251 aa21.24■□□□□ 0.99
CBX4-201ENST00000269397 ZMAT4Q9H898 229 aa21.24■□□□□ 0.99
CBX4-201ENST00000269397 C11orf21Q9P2W6 132 aa21.24■□□□□ 0.99
CBX4-201ENST00000269397 TMEM8BA6NDV4 472 aa21.24■□□□□ 0.99
CBX4-201ENST00000269397 NXT2Q9NPJ8 142 aaKnown RBP21.24■□□□□ 0.99
CBX4-201ENST00000269397 ODF3BA8MYP8 253 aa21.23■□□□□ 0.99
CBX4-201ENST00000269397 CNFNQ9BYD5 112 aa21.23■□□□□ 0.99
CBX4-201ENST00000269397 TRBV25-1A0A075B6N4 114 aa21.23■□□□□ 0.99
CBX4-201ENST00000269397 SPTBN1Q01082 2364 aaKnown RBP21.23■□□□□ 0.99
CBX4-201ENST00000269397 IGKV3D-20A0A0C4DH25 116 aa21.22■□□□□ 0.99
CBX4-201ENST00000269397 NHP2Q9NX24 153 aaKnown RBP21.22■□□□□ 0.99
CBX4-201ENST00000269397 TRAV40A0A0B4J280 105 aa21.22■□□□□ 0.99
CBX4-201ENST00000269397 OR5A1Q8NGJ0 315 aa21.22■□□□□ 0.99
CBX4-201ENST00000269397 RPL24P83731 157 aaKnown RBP21.21■□□□□ 0.99
CBX4-201ENST00000269397 VMO1Q7Z5L0 202 aa21.21■□□□□ 0.99
CBX4-201ENST00000269397 IGHV7-81A0A0B4J1V7 117 aa21.21■□□□□ 0.99
CBX4-201ENST00000269397 PRTN3P24158 256 aa21.21■□□□□ 0.99
CBX4-201ENST00000269397 ECSCRQ19T08 205 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms