RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 HBDP02042 147 aa9.43□□□□□ -0.9
USHBP1-201ENST00000252597 EGR2P11161 476 aaPredicted RBP9.43□□□□□ -0.9
USHBP1-201ENST00000252597 ZNF491Q8N8L2 437 aa9.43□□□□□ -0.9
USHBP1-201ENST00000252597 JMJD8Q96S16 334 aa9.43□□□□□ -0.9
USHBP1-201ENST00000252597 ZNF492Q9P255 531 aa9.43□□□□□ -0.9
USHBP1-201ENST00000252597 NDUFA3O95167 84 aa9.42□□□□□ -0.9
USHBP1-201ENST00000252597 CD3EP07766 207 aa9.42□□□□□ -0.9
USHBP1-201ENST00000252597 SIGLEC15Q6ZMC9 328 aa9.42□□□□□ -0.9
USHBP1-201ENST00000252597 TEX22C9J3V5 150 aa9.42□□□□□ -0.9
USHBP1-201ENST00000252597 C2orf91Q6ZV80 131 aa9.42□□□□□ -0.9
USHBP1-201ENST00000252597 SHANK2-AS3Q9BTD1 123 aa9.42□□□□□ -0.9
USHBP1-201ENST00000252597 LINC01545Q5VT33 79 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 OR1N2Q8NGR9 330 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 K7EIM0 57 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 MS4A6AQ9H2W1 248 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 FABP2P12104 132 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 ZNF80P51504 273 aaPredicted RBP9.41□□□□□ -0.9
USHBP1-201ENST00000252597 AMTNQ6UX39 209 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 FAM169BQ8N8A8 192 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 SVIPQ8NHG7 77 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 C21orf62Q9NYP8 219 aa9.41□□□□□ -0.9
USHBP1-201ENST00000252597 I3L2K1 104 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 TGFAP01135 160 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 MFAP4P55083 255 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 NDPQ00604 133 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 FAM104BQ5XKR9 115 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 IGFL2Q6UWQ7 119 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 GTSF1LQ9H1H1 148 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 SMAD7O15105 426 aaKnown RBP9.4□□□□□ -0.9
USHBP1-201ENST00000252597 CT83Q5H943 113 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 Q5PR19 223 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 ZC2HC1BQ5TFG8 222 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 WFDC12Q8WWY7 111 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 GFRA4Q9GZZ7 299 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 MAP1LC3AQ9H492 121 aa9.4□□□□□ -0.9
USHBP1-201ENST00000252597 CRYGCP07315 174 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 ARL3P36405 182 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 SMAGPQ0VAQ4 97 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 Q6ZS92 163 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 UTP20O75691 2785 aaKnown RBP9.39□□□□□ -0.91
USHBP1-201ENST00000252597 WNK1Q9H4A3 2382 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 NBR2O15453 112 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 MRGPRG-AS1Q2M3A8 158 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 TMEM30BQ3MIR4 351 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 PRAC2D3DTV9 90 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 NDUFS7O75251 213 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 DEFB1P60022 68 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 SPANXN1Q5VSR9 72 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 GLMPQ8WWB7 406 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 TMEM158Q8WZ71 300 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 NCOR1P1Q9H4R4 102 aa9.39□□□□□ -0.91
USHBP1-201ENST00000252597 IGKV2D-26A0A0A0MRZ7 120 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 TRAV40A0A0B4J280 105 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 M0R381 172 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 CRXO43186 299 aaPredicted RBP9.38□□□□□ -0.91
USHBP1-201ENST00000252597 EFNA4P52798 201 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 FXYD2P54710 66 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 Q6ZQT7 251 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 JKAMPQ9P055 326 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 DPM3Q9P2X0 92 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 EPG5Q9HCE0 2579 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 CLEC3BP05452 202 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 EMP1P54849 157 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 RBPJQ06330 500 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 SAMD5Q5TGI4 173 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 C16orf54Q6UWD8 224 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 SMIM13P0DJ93 91 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 IGF2-ASQ6U949 168 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 CLEC19AQ6UXS0 136 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 NUP37Q8NFH4 326 aa9.38□□□□□ -0.91
USHBP1-201ENST00000252597 ABCA2Q9BZC7 2435 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 SEC11AP67812 179 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 IL17RELQ6ZVW7 336 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 ARPC1AQ92747 370 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 PRR25Q96S07 402 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 LINC00574Q9H8X3 128 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 AGRNO00468 2067 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 A0A096LNJ9 63 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 C9orf118A6NHY6 69 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 H3BRN7 92 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 MGPP08493 103 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 S100A4P26447 101 aaKnown RBP9.37□□□□□ -0.91
USHBP1-201ENST00000252597 ZNF672Q499Z4 452 aaPredicted RBP9.37□□□□□ -0.91
USHBP1-201ENST00000252597 FAM71F2Q6NXP2 309 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 HIST1H4GQ99525 98 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 FLNCQ14315 2725 aa9.37□□□□□ -0.91
USHBP1-201ENST00000252597 RPL7P18124 248 aaKnown RBP9.36□□□□□ -0.91
USHBP1-201ENST00000252597 APOBEC3AP31941 199 aaPredicted RBP9.36□□□□□ -0.91
USHBP1-201ENST00000252597 CEACAM4O75871 244 aa9.36□□□□□ -0.91
USHBP1-201ENST00000252597 HSD52Q0P140 79 aa9.36□□□□□ -0.91
USHBP1-201ENST00000252597 TMEM8BA6NDV4 472 aa9.36□□□□□ -0.91
USHBP1-201ENST00000252597 IGLV1-47P01700 117 aa9.36□□□□□ -0.91
USHBP1-201ENST00000252597 DYNAPQ8N1N2 210 aa9.36□□□□□ -0.91
USHBP1-201ENST00000252597 TNFRSF6BO95407 300 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 TRGV3P03979 118 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 CSTL1Q9H114 145 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 G3V318 75 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 CCL21O00585 134 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 BMI1P35226 326 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 DLX6P56179 175 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms