RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TAS2R60P59551 318 aa6.7□□□□□ -1.34
VPS4B-201ENST00000238497 SLAQ13239 276 aa6.7□□□□□ -1.34
VPS4B-201ENST00000238497 PIFOQ8TCI5 191 aa6.7□□□□□ -1.34
VPS4B-201ENST00000238497 RABAC1Q9UI14 185 aa6.7□□□□□ -1.34
VPS4B-201ENST00000238497 TGP01266 2768 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 LOC389332A0A1B0GUA5 103 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 DEFB1P60022 68 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 ERCC8Q13216 396 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 ZNF705AQ6ZN79 300 aaPredicted RBP6.69□□□□□ -1.34
VPS4B-201ENST00000238497 Q6ZS46 218 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 RCHY1Q96PM5 261 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 ANKRD39Q53RE8 183 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 TMEM75Q8N9X5 138 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 RNF5Q99942 180 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 CITED1Q99966 193 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 MCRIP2Q9BUT9 160 aaKnown RBP6.69□□□□□ -1.34
VPS4B-201ENST00000238497 NAGKQ9UJ70 344 aa6.69□□□□□ -1.34
VPS4B-201ENST00000238497 A6NDX4 124 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 SCGB2A1O75556 95 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 GLMPQ8WWB7 406 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 PSG8Q9UQ74 426 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 A8MWL6 223 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 CTSGP08311 255 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 FXYD7P58549 80 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 IGF2BP2-AS1Q96M15 143 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 SHANK2-AS3Q9BTD1 123 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 TRBV19A0A075B6N1 114 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 SPRY2O43597 315 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 APOHP02749 345 aaPredicted RBP6.68□□□□□ -1.34
VPS4B-201ENST00000238497 CD28P10747 220 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 TMEM183BQ1AE95 376 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 RPP21Q9H633 154 aaKnown RBP6.68□□□□□ -1.34
VPS4B-201ENST00000238497 C16orf95Q9H693 158 aa6.68□□□□□ -1.34
VPS4B-201ENST00000238497 IGLV11-55A0A075B6I3 123 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 IZUMO1RA6ND01 250 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 BMPR1BO00238 502 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 TDRG1Q3Y452 100 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 C16orf54Q6UWD8 224 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 NPBQ8NG41 125 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 BORCS7Q96B45 105 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 ZNF702PQ9H963 129 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 OTORQ9NRC9 128 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 INS-IGF2F8WCM5 200 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 NDUFA3O95167 84 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 TOMM40O96008 361 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 ATP5G2Q06055 141 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 PVRIGQ6DKI7 326 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 WDR73Q6P4I2 378 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 TMEM136Q6ZRR5 245 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 GRAMD2BQ96HH9 432 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 CITED2Q99967 270 aaPredicted RBP6.67□□□□□ -1.34
VPS4B-201ENST00000238497 MRPL27Q9P0M9 148 aaKnown RBP6.67□□□□□ -1.34
VPS4B-201ENST00000238497 CBY1Q9Y3M2 126 aa6.67□□□□□ -1.34
VPS4B-201ENST00000238497 TRAV30A0A087WSZ9 112 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 TRBV12-3P01733 135 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 TYMSP04818 313 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 LCN12Q6JVE5 192 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 ZC2HC1AQ96GY0 325 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 VGLL1Q99990 258 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 KLK15Q9H2R5 256 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 TRAV41A0A0B4J266 112 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 M0R2Z0 102 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 IGKV3-20P01619 116 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 EGR2P11161 476 aaPredicted RBP6.66□□□□□ -1.34
VPS4B-201ENST00000238497 RPL7P18124 248 aaKnown RBP6.66□□□□□ -1.34
VPS4B-201ENST00000238497 DEFB104AQ8WTQ1 72 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 FMC1Q96HJ9 113 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 PMCHL2Q9BQD1 86 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 HLA-DQA1P01909 254 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 Q86TA4 180 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 ZNF664Q8N3J9 261 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 TSKUQ8WUA8 353 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 ZNF414Q96IQ9 312 aa6.66□□□□□ -1.34
VPS4B-201ENST00000238497 NACAE9PAV3 2078 aa6.65□□□□□ -1.34
VPS4B-201ENST00000238497 H3BRN7 92 aa6.65□□□□□ -1.34
VPS4B-201ENST00000238497 ARMS2P0C7Q2 107 aa6.65□□□□□ -1.34
VPS4B-201ENST00000238497 JOSD1Q15040 202 aaPredicted RBP6.65□□□□□ -1.34
VPS4B-201ENST00000238497 GDF5OSQ5U4N7 250 aa6.65□□□□□ -1.34
VPS4B-201ENST00000238497 TTC9CQ8N5M4 171 aa6.65□□□□□ -1.34
VPS4B-201ENST00000238497 GTSF1Q8WW33 167 aa6.65□□□□□ -1.34
VPS4B-201ENST00000238497 PRAC2D3DTV9 90 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 PF4P02776 101 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 PRB2P02812 416 aaPredicted RBP6.65□□□□□ -1.35
VPS4B-201ENST00000238497 S100A7AQ86SG5 101 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 OR4X2Q8NGF9 303 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 C16orf92Q96LL3 132 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 GNB1LQ9BYB4 327 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 MOB4Q9Y3A3 225 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 TMEM189A5PLL7 270 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 ARL3P36405 182 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 YPEL3P61236 119 aaPredicted RBP6.65□□□□□ -1.35
VPS4B-201ENST00000238497 HBBP68871 147 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 C10orf99Q6UWK7 81 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 SIGLEC15Q6ZMC9 328 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 EEF1AKMT3Q96AZ1 226 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 METTL26Q96S19 204 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 NRN1Q9NPD7 142 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 LY96Q9Y6Y9 160 aa6.65□□□□□ -1.35
VPS4B-201ENST00000238497 MEGF8Q7Z7M0 2845 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 DIRC3C9JPN6 131 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms