RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 C20orf144Q9BQM9 153 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 SEC22CQ9BRL7 303 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 NUDT15Q9NV35 164 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 RCL1Q9Y2P8 373 aaKnown RBP13.38□□□□□ -0.27
CLN3-262ENST00000637699 SNURFLB1AK76 121 aa13.37□□□□□ -0.27
CLN3-262ENST00000637699 MRPS12O15235 138 aaKnown RBP13.37□□□□□ -0.27
CLN3-262ENST00000637699 MBPP02686 304 aaPredicted RBP13.37□□□□□ -0.27
CLN3-262ENST00000637699 METTL15P1P0C7V9 234 aa13.37□□□□□ -0.27
CLN3-262ENST00000637699 FUSP35637 526 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLN3-262ENST00000637699 LINC00315P59091 139 aa13.37□□□□□ -0.27
CLN3-262ENST00000637699 GFI1BQ5VTD9 330 aa13.37□□□□□ -0.27
CLN3-262ENST00000637699 PATE2Q6UY27 113 aa13.37□□□□□ -0.27
CLN3-262ENST00000637699 S100A7AQ86SG5 101 aa13.37□□□□□ -0.27
CLN3-262ENST00000637699 DMBT1Q9UGM3 2413 aaPredicted RBP13.37□□□□□ -0.27
CLN3-262ENST00000637699 H3BNG1 76 aa13.36□□□□□ -0.27
CLN3-262ENST00000637699 J3KRW8 73 aa13.36□□□□□ -0.27
CLN3-262ENST00000637699 LINC00299Q6ZSB3 139 aa13.36□□□□□ -0.27
CLN3-262ENST00000637699 ARV1Q9H2C2 271 aa13.36□□□□□ -0.27
CLN3-262ENST00000637699 ZNF331Q9NQX6 463 aaPredicted RBP13.36□□□□□ -0.27
CLN3-262ENST00000637699 PRAC2D3DTV9 90 aa13.35□□□□□ -0.27
CLN3-262ENST00000637699 H2AFB2P0C5Z0 115 aa13.35□□□□□ -0.27
CLN3-262ENST00000637699 INAFM2P0DMQ5 153 aa13.35□□□□□ -0.27
CLN3-262ENST00000637699 LCN15Q6UWW0 184 aa13.35□□□□□ -0.27
CLN3-262ENST00000637699 ZNF431Q8TF32 576 aaPredicted RBP13.35□□□□□ -0.27
CLN3-262ENST00000637699 TMPRSS5Q9H3S3 457 aa13.35□□□□□ -0.27
CLN3-262ENST00000637699 C7orf66A4D0T2 115 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 H3BTX0 84 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 TSC22D2O75157 780 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 CXCL2P19875 107 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 TAS2R30P59541 319 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 SLC38A11Q08AI6 406 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 ARL16Q0P5N6 197 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 Q6ZTI0 123 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 S100ZQ8WXG8 99 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 SLC50A1Q9BRV3 221 aa13.34□□□□□ -0.27
CLN3-262ENST00000637699 A0A096LPF7 62 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 TRAV12-3A0A0B4J271 114 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 FAM240BA0A1B0GVZ2 78 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 FAM25EA8MYX2 175 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 Q6ZRN7 208 aaPredicted RBP13.33□□□□□ -0.28
CLN3-262ENST00000637699 LINC00305Q7Z4B0 112 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 C12orf45Q8N5I9 185 aaPredicted RBP13.33□□□□□ -0.28
CLN3-262ENST00000637699 VSIG2Q96IQ7 327 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 NPVFQ9HCQ7 196 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 PGPEP1Q9NXJ5 209 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 RNF24Q9Y225 148 aa13.33□□□□□ -0.28
CLN3-262ENST00000637699 SLC17A3O00476 420 aa13.32□□□□□ -0.28
CLN3-262ENST00000637699 ZNF846Q147U1 533 aa13.32□□□□□ -0.28
CLN3-262ENST00000637699 OR10P1Q8NGE3 313 aa13.32□□□□□ -0.28
CLN3-262ENST00000637699 PTTG2Q9NZH5 202 aa13.32□□□□□ -0.28
CLN3-262ENST00000637699 MGAT4CQ9UBM8 478 aa13.32□□□□□ -0.28
CLN3-262ENST00000637699 C5orf51A6NDU8 294 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 FNDC10F2Z333 226 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 K7EPK0 472 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 GOSR2O14653 212 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 XGP55808 180 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 ASAH1Q13510 395 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 MZT2BQ6NZ67 158 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 TEPPQ6URK8 271 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 BPIFA4PQ86YQ2 179 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 LYPD1Q8N2G4 141 aa13.31□□□□□ -0.28
CLN3-262ENST00000637699 LSM5Q9Y4Y9 91 aaKnown RBP13.31□□□□□ -0.28
CLN3-262ENST00000637699 TRGV2A0A075B6R0 118 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 EREGO14944 169 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 SIVA1O15304 175 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 CT45A10P0DMU9 189 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 DAZ2Q13117 558 aaKnown RBP13.3□□□□□ -0.28
CLN3-262ENST00000637699 C2orf50Q96LR7 162 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 C11orf1Q9H5F2 150 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 TNFRSF18Q9Y5U5 241 aa13.3□□□□□ -0.28
CLN3-262ENST00000637699 LEPP41159 167 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 IFITM3Q01628 133 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 PXDC1Q5TGL8 231 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 MORN5Q5VZ52 161 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 ZNF546Q86UE3 836 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 PYGO2Q9BRQ0 406 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 GSN-AS1Q9NRJ2 163 aa13.29□□□□□ -0.28
CLN3-262ENST00000637699 L7N2F9 121 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 AGPAT2O15120 278 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 COX7A2P2O60397 106 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 UPK1BO75841 260 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 ERVFC1-1P60608 527 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 VAMP2P63027 116 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 IL15RAQ13261 267 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 PXMP4Q9Y6I8 212 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 VPS13BQ7Z7G8 4022 aa13.28□□□□□ -0.28
CLN3-262ENST00000637699 H3BQ15 152 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 NXPH4O95158 308 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 BCAP31P51572 246 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 OPCMLQ14982 345 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 Q5VSD8 79 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 TMEM37Q8WXS4 190 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 SAT2Q96F10 170 aaPredicted RBP13.27□□□□□ -0.29
CLN3-262ENST00000637699 GGACTQ9BVM4 153 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 MYCBP2O75592 4640 aa13.27□□□□□ -0.29
CLN3-262ENST00000637699 TRGV1A0A0A0MS02 117 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 FAM24AA6NFZ4 105 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 NPIPB6E9PJ23 425 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 CST7O76096 145 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 IGLC2P0DOY2 106 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms