RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 HIST1H3AP68431 136 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 H3F3AP84243 136 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 COTL1Q14019 142 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 EDDM3AQ14507 147 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 KRTAP19-8Q3LI54 63 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 TRAPPC5Q8IUR0 188 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 OR4K15Q8NH41 348 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 CHCHD1Q96BP2 118 aaKnown RBP-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 CCDC42Q96M95 316 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 IMUPQ9GZP8 106 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 U3KQA8 63 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 MIA2Q96PC5 1412 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 TRBV19A0A075B6N1 114 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 CETN3O15182 167 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 SULT1C4O75897 302 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 PDE6GP18545 87 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 SERPINB9P50453 376 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 DYNLT3P51808 116 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 MYL6P60660 151 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 IMPG1Q17R60 797 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 PATE2Q6UY27 113 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 C5orf17Q8NAS9 161 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 GNPDA2Q8TDQ7 276 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 TEX37Q96LM6 180 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 CFAP53Q96M91 514 aa-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 MAP1BP46821 2468 aaKnown RBP-0.43□□□□□ -2.48
SCN1A-208ENST00000625916 COL24A1Q17RW2 1714 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 MYLKQ15746 1914 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 A0A0J9YY99 117 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 hDV103S1A0JD37 113 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 HAND1O96004 215 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 IGHV3-33P01772 117 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 ATP5G3P48201 142 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 GLYATL3Q5SZD4 288 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 DDI1Q8WTU0 396 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 PLEKHB2Q96CS7 222 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 ZHX1-C8orf76Q96EF9 292 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 ZNF714Q96N38 554 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 PARVBQ9HBI1 364 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 POPDC3Q9HBV1 291 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 CTNNBIP1Q9NSA3 81 aaPredicted RBP-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 CACNA1HO95180 2353 aa-0.44□□□□□ -2.48
SCN1A-208ENST00000625916 LOC107984156A0A0G2JMH3 177 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 RPP14O95059 124 aaKnown RBP-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 IFNA7P01567 189 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 SPRR2DP22532 72 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 AESQ08117 197 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 MIR22HGQ0VDD5 57 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 KLRD1Q13241 179 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 TMEM97Q5BJF2 176 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 FOXI2Q6ZQN5 318 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 VMO1Q7Z5L0 202 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 ARL17AQ8IVW1 177 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 IFT20Q8IY31 132 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 OTUD6BQ8N6M0 293 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 FAM213BQ8TBF2 198 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 MALSU1Q96EH3 234 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 ARL5BQ96KC2 179 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 LPAP08519 4548 aa-0.45□□□□□ -2.48
SCN1A-208ENST00000625916 ITPR1Q14643 2758 aa-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 AHCTF1Q8WYP5 2266 aa-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 LYPLA2O95372 231 aa-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 IFNA4P05014 189 aa-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 RPS17P08708 135 aaKnown RBP-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 XAF1Q6GPH4 301 aa-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 KIF1BO60333 1816 aa-0.46□□□□□ -2.48
SCN1A-208ENST00000625916 MYO15AQ9UKN7 3530 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 CEP164Q9UPV0 1460 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 ITPR2Q14571 2701 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 FAM208BQ5VWN6 2430 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 LAMA1P25391 3075 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 DUXBA0A1W2PPF3 345 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 A6NN06 94 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 LYRM1O43325 122 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 CRHP06850 196 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 SPRR2EP22531 72 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 RPS3P23396 243 aaKnown RBP eCLIP-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 NFYBP25208 207 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 SPRR2BP35325 72 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 SPRR2AP35326 72 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 CEBPGP53567 150 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 BTF3L4Q96K17 158 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 CST11Q9H112 138 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 CACYBPQ9HB71 228 aaKnown RBP-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 ENY2Q9NPA8 101 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 PRRC2CQ9Y520 2896 aaKnown RBP-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 PTPRDP23468 1912 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 LRP1BQ9NZR2 4599 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 ANK2Q01484 3957 aa-0.47□□□□□ -2.48
SCN1A-208ENST00000625916 HSPG2P98160 4391 aa-0.47□□□□□ -2.49
SCN1A-208ENST00000625916 F8P00451 2351 aa-0.47□□□□□ -2.49
SCN1A-208ENST00000625916 NF1P21359 2839 aa-0.47□□□□□ -2.49
SCN1A-208ENST00000625916 RBBP6Q7Z6E9 1792 aaKnown RBP-0.47□□□□□ -2.49
SCN1A-208ENST00000625916 WDR87Q6ZQQ6 2873 aa-0.47□□□□□ -2.49
SCN1A-208ENST00000625916 NUP98P52948 1817 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 MYO5AQ9Y4I1 1855 aaKnown RBP-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 MXRA5Q9NR99 2828 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 HMGB3O15347 200 aaKnown RBP-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 IGHV3-30P01768 117 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 IGHV3-30-5P0DP03 117 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms