RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 Q9H8V8 135 aa10.94□□□□□ -0.66
SHKBP1-228ENST00000602239 DNAJC4Q9NNZ3 241 aa10.94□□□□□ -0.66
SHKBP1-228ENST00000602239 HSPG2P98160 4391 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 ABCA13Q86UQ4 5058 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 A0A0J9YY99 117 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 GAGE12BA1L429 117 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 ZNF701M0R085 212 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 GAGE7O76087 117 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 CST7O76096 145 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 GAGE12FP0CL80 117 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 GAGE12GP0CL81 117 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 GAGE12IP0CL82 117 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 IL7P13232 177 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 NRARPQ7Z6K4 114 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 GNPNAT1Q96EK6 184 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 C20orf144Q9BQM9 153 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 KRTAP1-5Q9BYS1 174 aa10.93□□□□□ -0.66
SHKBP1-228ENST00000602239 TRAV12-3A0A0B4J271 114 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 FAM24AA6NFZ4 105 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 L7N2F9 121 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 CAMLGP49069 296 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 VAMP2P63027 116 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 CCDC28AQ8IWP9 274 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 ZNF431Q8TF32 576 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 C11orf1Q9H5F2 150 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 LSM5Q9Y4Y9 91 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 PXMP4Q9Y6I8 212 aa10.92□□□□□ -0.66
SHKBP1-228ENST00000602239 FAM25EA8MYX2 175 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 M6PRP20645 277 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 BCAP31P51572 246 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 ESRGQ1W209 222 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 RXFP4Q8TDU9 374 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 SEC22CQ9BRL7 303 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 C20orf85Q9H1P6 137 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 ZNF586Q9NXT0 402 aa10.91□□□□□ -0.66
SHKBP1-228ENST00000602239 NPIPB6E9PJ23 425 aa10.9□□□□□ -0.66
SHKBP1-228ENST00000602239 CAV2P51636 162 aa10.9□□□□□ -0.66
SHKBP1-228ENST00000602239 Q6ZRG5 221 aa10.9□□□□□ -0.66
SHKBP1-228ENST00000602239 WDR83OSQ9Y284 106 aa10.9□□□□□ -0.66
SHKBP1-228ENST00000602239 LRP1BQ9NZR2 4599 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 TRAV6A0A075B6T7 132 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 C5orf51A6NDU8 294 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 CDK2AP2O75956 126 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 RLN2P04090 185 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 TCRBP04435 133 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 ERCC8Q13216 396 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 RAB31Q13636 194 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 ZNF846Q147U1 533 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 CNPY1Q3B7I2 92 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 Q6ZTI0 123 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 UQCC1Q9NVA1 299 aa10.89□□□□□ -0.67
SHKBP1-228ENST00000602239 SNURFLB1AK76 121 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 M0R3E3 92 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 LYRM1O43325 122 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 LEPP41159 167 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 GUK1Q16774 197 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 VWC2Q2TAL6 325 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 OR1L4Q8NGR5 311 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 ZNF503Q96F45 646 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 ODF3Q96PU9 254 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 TMPRSS5Q9H3S3 457 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 GSN-AS1Q9NRJ2 163 aa10.88□□□□□ -0.67
SHKBP1-228ENST00000602239 TRBV19A0A075B6N1 114 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 IGSF23A1L1A6 192 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 NDUFB4O95168 129 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 RPL29P47914 159 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 CD300CQ08708 224 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 DAZ2Q13117 558 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 IL15RAQ13261 267 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 SPATA12Q7Z6I5 190 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 VSIG2Q96IQ7 327 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 C2orf50Q96LR7 162 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 PYGO2Q9BRQ0 406 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 Q9H3A6 140 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 SLC39A9Q9NUM3 307 aa10.87□□□□□ -0.67
SHKBP1-228ENST00000602239 UBE2L5PA0A1B0GUS4 154 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 H3BNG1 76 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 ZNF324O75467 553 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 KRTAP10-2P60368 255 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 C12orf45Q8N5I9 185 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 TMEM252Q8N6L7 170 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 MAPKAPK5-AS1Q8N8E1 139 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 C11orf72Q8NBR9 251 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 UPK3BQ9BT76 320 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 AGPAT4-IT1Q9H0P7 198 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 NUDT15Q9NV35 164 aa10.86□□□□□ -0.67
SHKBP1-228ENST00000602239 A0A096LPF7 62 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 ZNF253O75346 499 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 SLC25A5P05141 298 aaKnown RBP10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 PYYP10082 97 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 S100A11P31949 105 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 SULT1A1P50225 295 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 BAXQ07812 192 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 BTN1A1Q13410 526 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 RAB32Q13637 225 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 GCSAMLQ5JQS6 135 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 Q6ZQT7 251 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 FAM19A4Q96LR4 140 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 PFDN5Q99471 154 aa10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 LYRM2Q9NU23 88 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms