RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 METTL15P1P0C7V9 234 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 CNPY1Q3B7I2 92 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 C10orf113Q5VZT2 155 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 C12orf45Q8N5I9 185 aaPredicted RBP6.65□□□□□ -1.34
VRK3-224ENST00000601849 ZNF680Q8NEM1 530 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 OR1L4Q8NGR5 311 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 ZNF586Q9NXT0 402 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 TRAV12-3A0A0B4J271 114 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 EPM2AB3EWF7 344 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 J3KRW8 73 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 L7N2F9 121 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 AGPAT2O15120 278 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 SIVA1O15304 175 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 IFNA5P01569 189 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 VAMP2P63027 116 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 SLC38A11Q08AI6 406 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 DAZ2Q13117 558 aaKnown RBP6.64□□□□□ -1.35
VRK3-224ENST00000601849 SLAQ13239 276 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 IAH1Q2TAA2 248 aaPredicted RBP6.64□□□□□ -1.35
VRK3-224ENST00000601849 SPANXN2Q5MJ10 180 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 GFI1BQ5VTD9 330 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 TMEM14EPQ6UXP3 125 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 PATE2Q6UY27 113 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 NFE4Q86UQ8 179 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 LINC00612Q8N6U2 182 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 TRIM63Q969Q1 353 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 ODF3Q96PU9 254 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 PFDN5Q99471 154 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 DNAJC4Q9NNZ3 241 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 GSKIPQ9P0R6 139 aa6.64□□□□□ -1.35
VRK3-224ENST00000601849 SLC25A5P05141 298 aaKnown RBP6.63□□□□□ -1.35
VRK3-224ENST00000601849 SNRPCP09234 159 aaKnown RBP6.63□□□□□ -1.35
VRK3-224ENST00000601849 OR4E1P0C645 316 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 HOXA5P20719 270 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 ERVFC1-1P60608 527 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 ZNF846Q147U1 533 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 TRIQKQ629K1 86 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 SRRQ9GZT4 340 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 C20orf85Q9H1P6 137 aa6.63□□□□□ -1.35
VRK3-224ENST00000601849 HERC1Q15751 4861 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 TRGV1A0A0A0MS02 117 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 MRPS12O15235 138 aaKnown RBP6.62□□□□□ -1.35
VRK3-224ENST00000601849 NDUFB6O95139 128 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 CAMLGP49069 296 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 BCAP31P51572 246 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 CDPF1Q6NVV7 123 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 LINC00299Q6ZSB3 139 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 ZNF431Q8TF32 576 aaPredicted RBP6.62□□□□□ -1.35
VRK3-224ENST00000601849 LINC00477Q96M19 166 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 C18orf15Q96N68 181 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 SDHCQ99643 169 aaPredicted RBP6.62□□□□□ -1.35
VRK3-224ENST00000601849 TMPRSS5Q9H3S3 457 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 PRELID1Q9Y255 219 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 TIMM9Q9Y5J7 89 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 ICOSQ9Y6W8 199 aa6.62□□□□□ -1.35
VRK3-224ENST00000601849 PRAC2D3DTV9 90 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 PAX4O43316 350 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 ZNF253O75346 499 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 GPX1P07203 203 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 CT45A10P0DMU9 189 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 IGLC2P0DOY2 106 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 PVALBP20472 110 aaPredicted RBP6.61□□□□□ -1.35
VRK3-224ENST00000601849 LINC00315P59091 139 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 KRTAP10-2P60368 255 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 OPCMLQ14982 345 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 Q6ZTI0 123 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 EIF4E3Q8N5X7 224 aaKnown RBP6.61□□□□□ -1.35
VRK3-224ENST00000601849 TMEM37Q8WXS4 190 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 FRZBQ92765 325 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 MRPL53Q96EL3 112 aaKnown RBP6.61□□□□□ -1.35
VRK3-224ENST00000601849 SAT2Q96F10 170 aaPredicted RBP6.61□□□□□ -1.35
VRK3-224ENST00000601849 PARD6GQ9BYG4 376 aaPredicted RBP6.61□□□□□ -1.35
VRK3-224ENST00000601849 AAMDCQ9H7C9 122 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 GSN-AS1Q9NRJ2 163 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 FUT9Q9Y231 359 aa6.61□□□□□ -1.35
VRK3-224ENST00000601849 A0A096LPF7 62 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 C7orf66A4D0T2 115 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 C7orf71A4D174 169 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 NPIPB6E9PJ23 425 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 H3BTX0 84 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 K7EP13 123 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 MPDU1O75352 247 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 CCNKO75909 580 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 INAFM2P0DMQ5 153 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 PRB4P10163 310 aaPredicted RBP6.6□□□□□ -1.35
VRK3-224ENST00000601849 HIST1H1EP10412 219 aaKnown RBP6.6□□□□□ -1.35
VRK3-224ENST00000601849 CAV2P51636 162 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 KIR3DS1Q14943 382 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 MRPL23Q16540 153 aaKnown RBP6.6□□□□□ -1.35
VRK3-224ENST00000601849 BAK1Q16611 211 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 ANXA2RQ3ZCQ2 193 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 NRARPQ7Z6K4 114 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 ARPC5LQ9BPX5 153 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 LINC00467Q9BRT7 94 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 KRTAP1-5Q9BYS1 174 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 PRO0255Q9UI72 69 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 HHLA3Q9XRX5 114 aa6.6□□□□□ -1.35
VRK3-224ENST00000601849 H3BQ15 152 aa6.59□□□□□ -1.35
VRK3-224ENST00000601849 SLC17A3O00476 420 aa6.59□□□□□ -1.35
VRK3-224ENST00000601849 RGS13O14921 159 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms