RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PRR25Q96S07 402 aa10.67□□□□□ -0.7
UPF1-211ENST00000600868 GGTLC3B5MD39 225 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 M0R3E3 92 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 CSN1S1P47710 185 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 CCDC28AQ8IWP9 274 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 Q8N1Y9 231 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 C5orf17Q8NAS9 161 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 ZNF738Q8NE65 137 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 RXFP4Q8TDU9 374 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 RPUSD4Q96CM3 377 aaKnown RBP10.66□□□□□ -0.7
UPF1-211ENST00000600868 TXNDC17Q9BRA2 123 aa10.66□□□□□ -0.7
UPF1-211ENST00000600868 ZNF705FA8MVS1 300 aaPredicted RBP10.65□□□□□ -0.7
UPF1-211ENST00000600868 BCL2P10415 239 aa10.65□□□□□ -0.7
UPF1-211ENST00000600868 CST9LP1Q5W188 147 aa10.65□□□□□ -0.7
UPF1-211ENST00000600868 FOXI2Q6ZQN5 318 aa10.65□□□□□ -0.7
UPF1-211ENST00000600868 CMTM2Q8TAZ6 248 aa10.65□□□□□ -0.7
UPF1-211ENST00000600868 TCEAL7Q9BRU2 100 aa10.65□□□□□ -0.7
UPF1-211ENST00000600868 SLC25A5P05141 298 aaKnown RBP10.64□□□□□ -0.71
UPF1-211ENST00000600868 ATP5G3P48201 142 aa10.64□□□□□ -0.71
UPF1-211ENST00000600868 HAGHQ16775 308 aa10.64□□□□□ -0.71
UPF1-211ENST00000600868 APRG1Q8IVJ8 170 aa10.64□□□□□ -0.71
UPF1-211ENST00000600868 SAV1Q9H4B6 383 aaPredicted RBP10.64□□□□□ -0.71
UPF1-211ENST00000600868 VAX2Q9UIW0 290 aa10.64□□□□□ -0.71
UPF1-211ENST00000600868 NBEAL1Q6ZS30 2694 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 DNHD1Q96M86 4753 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 A0A0J9YX75 114 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 LOC102723971A0A1B0GUV8 181 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 RBFOX3A6NFN3 312 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 DIRC3C9JPN6 131 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 C11orf94C9JXX5 98 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 PRAC2D3DTV9 90 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 MEF2BQ02080 365 aaPredicted RBP10.63□□□□□ -0.71
UPF1-211ENST00000600868 ZNF124Q15973 351 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 EBLN2Q6P2I7 272 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 OR8A1Q8NGG7 326 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 FAM210AQ96ND0 272 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 EPDR1Q9UM22 224 aa10.63□□□□□ -0.71
UPF1-211ENST00000600868 SERTM2A0A1B0GWG4 89 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 RBAKDNA6NC62 111 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 KNCNA6PVL3 124 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 F6UB75 175 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 TCRAP04437 139 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 HLA-DRB4P13762 266 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 DEFB1P60022 68 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 GNG5P63218 68 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 ZNF506Q5JVG8 444 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 GDF5OSQ5U4N7 250 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 DEFB125Q8N687 156 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 HIST1H2BAQ96A08 127 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 CITED4Q96RK1 184 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 RARRES2Q99969 163 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 WFDC10AQ9H1F0 79 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 HLA-DRB4X5D2U9 266 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 NOTCH1P46531 2555 aa10.62□□□□□ -0.71
UPF1-211ENST00000600868 DNAH3Q8TD57 4116 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 F6UZH7 168 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 H3BMM0 161 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 NDUFS6O75380 124 aaKnown RBP10.61□□□□□ -0.71
UPF1-211ENST00000600868 DUSP14O95147 198 aaKnown RBP10.61□□□□□ -0.71
UPF1-211ENST00000600868 ACTL10Q5JWF8 245 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 OR10J6PQ8NGY7 276 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 CLUHP3Q96NS8 147 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 ATG101Q9BSB4 218 aa10.61□□□□□ -0.71
UPF1-211ENST00000600868 AURKAIP1Q9NWT8 199 aaPredicted RBP10.61□□□□□ -0.71
UPF1-211ENST00000600868 IGKV2-40A0A087WW87 121 aaPredicted RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 A8MTW9 85 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 NPIPB6E9PJ23 425 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 K7EQM0 130 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 PEX7O00628 323 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 PDE6DO43924 150 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 IGKV2D-40P01614 121 aaPredicted RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 ZNF705DP0CH99 300 aaPredicted RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 ZNF705BP0CI00 300 aaPredicted RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 PRB4P10163 310 aaPredicted RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 HIST1H1AQ02539 215 aaPredicted RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 TOR2AQ5JU69 321 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 C9orf47Q6ZRZ4 202 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 GOLT1AQ6ZVE7 132 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 STHQ8IWL8 128 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 CYB561D1Q8N8Q1 229 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 LINC00477Q96M19 166 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 EIF5A2Q9GZV4 153 aaKnown RBP10.6□□□□□ -0.71
UPF1-211ENST00000600868 SRD5A3Q9H8P0 318 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 MED9Q9NWA0 146 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 RPH3ALQ9UNE2 315 aa10.6□□□□□ -0.71
UPF1-211ENST00000600868 A8MZ25 164 aa10.59□□□□□ -0.71
UPF1-211ENST00000600868 CNN1P51911 297 aaKnown RBP10.59□□□□□ -0.71
UPF1-211ENST00000600868 TRPT1Q86TN4 253 aaKnown RBP10.59□□□□□ -0.71
UPF1-211ENST00000600868 C11orf52Q96A22 123 aa10.59□□□□□ -0.71
UPF1-211ENST00000600868 VGLL1Q99990 258 aa10.59□□□□□ -0.71
UPF1-211ENST00000600868 AGPAT4-IT1Q9H0P7 198 aa10.59□□□□□ -0.71
UPF1-211ENST00000600868 SMDT1Q9H4I9 107 aa10.59□□□□□ -0.71
UPF1-211ENST00000600868 PPP1R14DQ9NXH3 145 aa10.59□□□□□ -0.71
UPF1-211ENST00000600868 SCO2A0A1W2PP80 73 aa10.58□□□□□ -0.72
UPF1-211ENST00000600868 RAB19A4D1S5 217 aa10.58□□□□□ -0.72
UPF1-211ENST00000600868 FBLL1A6NHQ2 334 aaKnown RBP10.58□□□□□ -0.72
UPF1-211ENST00000600868 IGHV4-30-4P0DP06 118 aa10.58□□□□□ -0.72
UPF1-211ENST00000600868 TMEM75Q8N9X5 138 aa10.58□□□□□ -0.72
UPF1-211ENST00000600868 C2CD4CQ8TF44 421 aa10.58□□□□□ -0.72
UPF1-211ENST00000600868 TUBA4BQ9H853 241 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 170.2 ms