RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SHISA2Q6UWI4 295 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 C12orf54Q6X4T0 127 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 TMEM61Q8N0U2 210 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 CMTM2Q8TAZ6 248 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 C16orf92Q96LL3 132 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 C20orf173Q96LM9 149 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 ATG101Q9BSB4 218 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 DERL1Q9BUN8 251 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 KLF12Q9Y4X4 402 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 AGRNO00468 2067 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 AKR1C3P42330 323 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 CEBPGP53567 150 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 CD300EQ496F6 205 aaPredicted RBP11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 FAM74A3Q4VXF1 159 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 LCN12Q6JVE5 192 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 GBGT1Q8N5D6 347 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 RNF182Q8N6D2 247 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 C3orf56Q8N813 242 aa11.06□□□□□ -0.64
SHKBP1-211ENST00000595945 IGKV3-7A0A075B6H7 116 aa11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 ZNF705FA8MVS1 300 aaPredicted RBP11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 IGLV1-51P01701 117 aa11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 LURAP1LQ8IV03 231 aa11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 OR2K2Q8NGT1 345 aa11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 SPATA3Q8NHX4 192 aa11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 SMIM7Q9BQ49 75 aa11.05□□□□□ -0.64
SHKBP1-211ENST00000595945 TRBV20OR9-2A0A075B6H5 130 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 TRBV6-1A0A0K0K1D8 114 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 SERTM2A0A1B0GWG4 89 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 ZNF727A8MUV8 499 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 C9JCJ5 164 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 PRAC2D3DTV9 90 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 IGLV2-11P01706 119 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 S100A9P06702 114 aaKnown RBP11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 ID1P41134 155 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 RPL35P42766 123 aaKnown RBP11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 CSN1S1P47710 185 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 CNN1P51911 297 aaKnown RBP11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 TAS2R60P59551 318 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 TMEM183BQ1AE95 376 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 ZNF674Q2M3X9 581 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 RBPMS2Q6ZRY4 209 aaKnown RBP11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 GOLT1AQ6ZVE7 132 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 FAM24BQ8N5W8 94 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 WFDC9Q8NEX5 89 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 IGF2BP2-AS1Q96M15 143 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 LINC00479Q96M42 142 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 RPH3ALQ9UNE2 315 aa11.04□□□□□ -0.64
SHKBP1-211ENST00000595945 TRAV34A0A0B4J273 112 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 IZUMO1RA6ND01 250 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 DNASE2O00115 360 aaPredicted RBP11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 SAP30O75446 220 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 PAFAH1B2P68402 229 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 GUCA2BQ16661 112 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 WFDC3Q8IUB2 231 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 TMEM75Q8N9X5 138 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 FMC1Q96HJ9 113 aa11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 SPAG8Q99932 426 aaPredicted RBP11.03□□□□□ -0.64
SHKBP1-211ENST00000595945 IGKV2-40A0A087WW87 121 aaPredicted RBP11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 RBAKDNA6NC62 111 aa11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 IGKV2D-40P01614 121 aaPredicted RBP11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 APOC3P02656 99 aa11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 TFPI2P48307 235 aa11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 NIPSNAP3BQ9BS92 247 aa11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 SDF2L1Q9HCN8 221 aa11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 NAT8Q9UHE5 227 aa11.02□□□□□ -0.65
SHKBP1-211ENST00000595945 FBLL1A6NHQ2 334 aaKnown RBP11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 IGLV2-8P01709 118 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 PRB4P10163 310 aaPredicted RBP11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 TMEM241Q24JQ0 296 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 CENPWQ5EE01 88 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 Q86TA4 180 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 ZNF738Q8NE65 137 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 TVP23CQ96ET8 276 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 PSG8Q9UQ74 426 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 ZNF256Q9Y2P7 627 aaPredicted RBP11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 LY96Q9Y6Y9 160 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 PKD1L1Q8TDX9 2849 aa11.01□□□□□ -0.65
SHKBP1-211ENST00000595945 TRAV8-1A0A0A6YYK1 113 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 OR4C46A6NHA9 309 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 K7EQM0 130 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 LTAP01374 205 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 INSL3P51460 131 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 UBE2G1P62253 170 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 SNRPD3P62318 126 aaKnown RBP11□□□□□ -0.65
SHKBP1-211ENST00000595945 RPL23P62829 140 aaKnown RBP11□□□□□ -0.65
SHKBP1-211ENST00000595945 FLI1Q01543 452 aaPredicted RBP11□□□□□ -0.65
SHKBP1-211ENST00000595945 C9orf66Q5T8R8 295 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 C9orf47Q6ZRZ4 202 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 VGLL1Q99990 258 aa11□□□□□ -0.65
SHKBP1-211ENST00000595945 PGPEP1LA6NFU8 196 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 NPIPB6E9PJ23 425 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 ZNF688P0C7X2 276 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 GNG4P50150 75 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 PNRC1Q12796 327 aaPredicted RBP10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 BEAN1Q3B7T3 259 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 PSMG4Q5JS54 123 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 LINC01551Q86U37 167 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 CLRN3Q8NCR9 226 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 OCC1Q8TAD7 63 aa10.99□□□□□ -0.65
SHKBP1-211ENST00000595945 SGK494Q96LW2 274 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 183 ms