RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 GATA3P23771 443 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 COL8A2P25067 703 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 HTR1DP28221 377 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 GPR183P32249 361 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 PRCDQ00LT1 54 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 DEFB112Q30KQ8 113 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 TCTEX1D4Q5JR98 221 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 PSMG4Q5JS54 123 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 TIMM23BQ5SRD1 257 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 GDF5OSQ5U4N7 250 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 C9orf135Q5VTT2 229 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 AMMECR1LQ6DCA0 310 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 Q6ZSV7 163 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 NEGR1Q7Z3B1 354 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 LHFPL4Q7Z7J7 247 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 GCSAMQ8N6F7 178 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 OR9G4Q8NGQ1 327 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 OR1L4Q8NGR5 311 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 OR1B1Q8NGR6 318 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 OR1L8Q8NGR8 309 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 OR1N2Q8NGR9 330 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 CFHR4Q92496 578 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 ZNF503Q96F45 646 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 COQ2Q96H96 371 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 URB1-AS1Q96HZ7 61 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 AP1S3Q96PC3 154 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 RPP21Q9H633 154 aaKnown RBP3.28□□□□□ -1.88
LIG3-211ENST00000588713 ZNF430Q9H8G1 570 aaPredicted RBP3.28□□□□□ -1.88
LIG3-211ENST00000588713 SERTAD4Q9NUC0 356 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 C19orf73Q9NVV2 129 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 CLEC5AQ9NY25 188 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 PRNDQ9UKY0 176 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 PSG11Q9UQ72 335 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 RNF24Q9Y225 148 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 ARFGEF3Q5TH69 2177 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 TRAV8-6A0A0B4J262 113 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 A0A1B0GV72 72 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 A0A1B0GW15 77 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 hDV102S1A0JD36 115 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 GAGE10A6NGK3 116 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 HIGD1CA8MV81 97 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 A8MWL6 223 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 C22orf46C9J442 243 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 F2RL2O00254 374 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 PSPNO60542 156 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 SPINK4O60575 86 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 FCGR3BO75015 233 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 FGF6P10767 208 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 HSPE1P61604 102 aaKnown RBP3.27□□□□□ -1.89
LIG3-211ENST00000588713 RPL8P62917 257 aaKnown RBP3.27□□□□□ -1.89
LIG3-211ENST00000588713 SLC35B1P78383 322 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 MZT1Q08AG7 82 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 C2orf83Q53S99 150 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 TMEM97Q5BJF2 176 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 SAMD13Q5VXD3 122 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 ACP7Q6ZNF0 438 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 FA2HQ7L5A8 372 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 ZNF329Q86UD4 541 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 FAM90A1Q86YD7 464 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 C5orf17Q8NAS9 161 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 DEFB108BQ8NET1 73 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 STXBP6Q8NFX7 210 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 OR4X2Q8NGF9 303 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 OR13A1Q8NGR1 328 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 OR2T6Q8NHC8 308 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 PPP1R35Q8TAP8 253 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 UBALD1Q8TB05 177 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 LINC00476Q8WZB0 136 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 ST6GALNAC6Q969X2 333 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 FMC1Q96HJ9 113 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 FAM167A-AS1Q96KT0 104 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 S1PR3Q99500 378 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 NDFIP1Q9BT67 221 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 SLC25A2Q9BXI2 301 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 IFI27L2Q9H2X8 130 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 GCM1Q9NP62 436 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 ZNF355PQ9NSJ1 428 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 IDI2-AS1Q9NZ38 188 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 RPH3ALQ9UNE2 315 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 AMMECR1Q9Y4X0 333 aaPredicted RBP3.27□□□□□ -1.89
LIG3-211ENST00000588713 DOCK11Q5JSL3 2073 aa3.27□□□□□ -1.89
LIG3-211ENST00000588713 DYNC1H1Q14204 4646 aaKnown RBP3.26□□□□□ -1.89
LIG3-211ENST00000588713 A0A087X0K7 114 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 LOC102724200A0A096LPH7 203 aaPredicted RBP3.26□□□□□ -1.89
LIG3-211ENST00000588713 TRAV40A0A0B4J280 105 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 TRBV6-1A0A0K0K1D8 114 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 A0A1W2PPM0 123 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 C19orf71A6NCJ1 209 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 SRRM4A7MD48 611 aaKnown RBP3.26□□□□□ -1.89
LIG3-211ENST00000588713 ZNF207O43670 478 aaKnown RBP3.26□□□□□ -1.89
LIG3-211ENST00000588713 SAP30O75446 220 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 FOXH1O75593 365 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 ACTL6BO94805 426 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 CA1P00915 261 aaPredicted RBP3.26□□□□□ -1.89
LIG3-211ENST00000588713 CT45A6P0DMU7 189 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 CT45A5P0DMU8 189 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 CT45A10P0DMU9 189 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 CT45A7P0DMV0 189 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 CCL2P13500 99 aa3.26□□□□□ -1.89
LIG3-211ENST00000588713 HLA-DRB4P13762 266 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms