RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 C2CD4CQ8TF44 421 aa18.82■□□□□ 0.6
SHMT1-207ENST00000580002 TXNDC17Q9BRA2 123 aa18.82■□□□□ 0.6
SHMT1-207ENST00000580002 NKX6-2Q9C056 277 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-207ENST00000580002 DNASE2O00115 360 aaPredicted RBP18.81■□□□□ 0.6
SHMT1-207ENST00000580002 PEX7O00628 323 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 LCN12Q6JVE5 192 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 C11orf52Q96A22 123 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 SLC50A1Q9BRV3 221 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 PARLQ9H300 379 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 TRAV8-1A0A0A6YYK1 113 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 F6UZH7 168 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 TMEM250H0YL14 139 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 K7EQG2 157 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 TCRAP04437 139 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 RBPMS2Q6ZRY4 209 aaKnown RBP18.81■□□□□ 0.6
SHMT1-207ENST00000580002 GOLT1AQ6ZVE7 132 aa18.81■□□□□ 0.6
SHMT1-207ENST00000580002 ANK2Q01484 3957 aa18.8■□□□□ 0.6
SHMT1-207ENST00000580002 IGKV2-40A0A087WW87 121 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-207ENST00000580002 F8W036 122 aa18.8■□□□□ 0.6
SHMT1-207ENST00000580002 IGKV2D-40P01614 121 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-207ENST00000580002 ZNF705DP0CH99 300 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-207ENST00000580002 ZNF705BP0CI00 300 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-207ENST00000580002 SOHLH1Q5JUK2 328 aa18.8■□□□□ 0.6
SHMT1-207ENST00000580002 CMTM2Q8TAZ6 248 aa18.8■□□□□ 0.6
SHMT1-207ENST00000580002 DIRC3C9JPN6 131 aa18.79■□□□□ 0.6
SHMT1-207ENST00000580002 ZNF688P0C7X2 276 aa18.79■□□□□ 0.6
SHMT1-207ENST00000580002 PSG3Q16557 428 aa18.79■□□□□ 0.6
SHMT1-207ENST00000580002 TRBV20OR9-2A0A075B6H5 130 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 PGPEP1LA6NFU8 196 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 TSPAN4O14817 238 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 MEOX2P50222 304 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 F6UB75 175 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 ISLRO14498 428 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 IGLV1-51P01701 117 aa18.78■□□□□ 0.6
SHMT1-207ENST00000580002 RPL35P42766 123 aaKnown RBP18.78■□□□□ 0.6
SHMT1-207ENST00000580002 ERCC8Q13216 396 aa18.77■□□□□ 0.6
SHMT1-207ENST00000580002 VGLL1Q99990 258 aa18.77■□□□□ 0.6
SHMT1-207ENST00000580002 ATG101Q9BSB4 218 aa18.77■□□□□ 0.6
SHMT1-207ENST00000580002 AURKAIP1Q9NWT8 199 aaPredicted RBP18.77■□□□□ 0.6
SHMT1-207ENST00000580002 GUCA2BQ16661 112 aa18.76■□□□□ 0.59
SHMT1-207ENST00000580002 IGLV2-11P01706 119 aa18.76■□□□□ 0.59
SHMT1-207ENST00000580002 AKR1C3P42330 323 aa18.76■□□□□ 0.59
SHMT1-207ENST00000580002 C10orf91Q5T1B1 145 aa18.76■□□□□ 0.59
SHMT1-207ENST00000580002 ZNF738Q8NE65 137 aa18.76■□□□□ 0.59
SHMT1-207ENST00000580002 HIST1H2BAQ96A08 127 aa18.76■□□□□ 0.59
SHMT1-207ENST00000580002 ZNF256Q9Y2P7 627 aaPredicted RBP18.76■□□□□ 0.59
SHMT1-207ENST00000580002 ZNF727A8MUV8 499 aa18.75■□□□□ 0.59
SHMT1-207ENST00000580002 IGLL1P15814 213 aa18.75■□□□□ 0.59
SHMT1-207ENST00000580002 CD33P20138 364 aa18.75■□□□□ 0.59
SHMT1-207ENST00000580002 PSMG4Q5JS54 123 aa18.75■□□□□ 0.59
SHMT1-207ENST00000580002 SMIM7Q9BQ49 75 aa18.75■□□□□ 0.59
SHMT1-207ENST00000580002 SEC11CQ9BY50 192 aa18.75■□□□□ 0.59
SHMT1-207ENST00000580002 ZNF124Q15973 351 aa18.74■□□□□ 0.59
SHMT1-207ENST00000580002 WFDC9Q8NEX5 89 aa18.74■□□□□ 0.59
SHMT1-207ENST00000580002 NDUFS6O75380 124 aaKnown RBP18.73■□□□□ 0.59
SHMT1-207ENST00000580002 CSN1S1P47710 185 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 PAFAH1B2P68402 229 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 GDF5OSQ5U4N7 250 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 PKD1L1Q8TDX9 2849 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 KRBOX1C9JBD0 128 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 APOC3P02656 99 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 NHLRC2Q8NBF2 726 aa18.73■□□□□ 0.59
SHMT1-207ENST00000580002 ID1P41134 155 aa18.72■□□□□ 0.59
SHMT1-207ENST00000580002 PRELID1Q9Y255 219 aa18.72■□□□□ 0.59
SHMT1-207ENST00000580002 KLF12Q9Y4X4 402 aa18.72■□□□□ 0.59
SHMT1-207ENST00000580002 TRAV25A0A0B4J276 109 aa18.71■□□□□ 0.59
SHMT1-207ENST00000580002 CNN1P51911 297 aaKnown RBP18.71■□□□□ 0.59
SHMT1-207ENST00000580002 IGF2BP2-AS1Q96M15 143 aa18.71■□□□□ 0.59
SHMT1-207ENST00000580002 CENPWQ5EE01 88 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 PRNTQ86SH4 94 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 Q8TAT8 98 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 TVP23CQ96ET8 276 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 SPAG8Q99932 426 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-207ENST00000580002 TCEAL7Q9BRU2 100 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 CARHSP1Q9Y2V2 147 aaKnown RBP18.7■□□□□ 0.58
SHMT1-207ENST00000580002 DEFB131AP59861 70 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 TMEM183BQ1AE95 376 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 MRPL53Q96EL3 112 aaKnown RBP18.7■□□□□ 0.58
SHMT1-207ENST00000580002 AGPAT4-IT1Q9H0P7 198 aa18.7■□□□□ 0.58
SHMT1-207ENST00000580002 IGLV2-8P01709 118 aa18.69■□□□□ 0.58
SHMT1-207ENST00000580002 OCC1Q8TAD7 63 aa18.69■□□□□ 0.58
SHMT1-207ENST00000580002 PSG8Q9UQ74 426 aa18.69■□□□□ 0.58
SHMT1-207ENST00000580002 AGRNO00468 2067 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 SNRPD3P62318 126 aaKnown RBP18.68■□□□□ 0.58
SHMT1-207ENST00000580002 C9orf66Q5T8R8 295 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 UBE2G1P62253 170 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 TMEM241Q24JQ0 296 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 APRG1Q8IVJ8 170 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 GPR61Q9BZJ8 451 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 MAP6D1Q9H9H5 199 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 SDF2L1Q9HCN8 221 aa18.68■□□□□ 0.58
SHMT1-207ENST00000580002 TRAV2A0A0B4J234 112 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 KNCNA6PVL3 124 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 CD7P09564 240 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 FLI1Q01543 452 aaPredicted RBP18.67■□□□□ 0.58
SHMT1-207ENST00000580002 ODF3L2Q3SX64 289 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 ATRAIDQ6UW56 229 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 Q86TA4 180 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 TMEM75Q8N9X5 138 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 OR8A1Q8NGG7 326 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms