RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PRAC2D3DTV9 90 aa14.07□□□□□ -0.16
SS18-209ENST00000578595 UBE2L3P68036 154 aaKnown RBP14.07□□□□□ -0.16
SS18-209ENST00000578595 ACOT6Q3I5F7 207 aaPredicted RBP14.07□□□□□ -0.16
SS18-209ENST00000578595 C1orf158Q8N1D5 194 aa14.07□□□□□ -0.16
SS18-209ENST00000578595 PARD6GQ9BYG4 376 aaPredicted RBP14.07□□□□□ -0.16
SS18-209ENST00000578595 STARD9Q9P2P6 4700 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 LOC102723971A0A1B0GUV8 181 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 SMIM9A6NGZ8 99 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 J3KRW8 73 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 M0R3E3 92 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 ZNF253O75346 499 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 TAS2R45P59539 299 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 PDE6HQ13956 83 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 RRN3P1Q2M238 152 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 KHDC3LQ587J8 217 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 EXOC3-AS1Q8N2X6 119 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 FAM167A-AS1Q96KT0 104 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 NEU1Q99519 415 aa14.06□□□□□ -0.16
SS18-209ENST00000578595 LCE6AA0A183 80 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 A0A1W2PPV4 95 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 EIF3GO75821 320 aaKnown RBP eCLIP14.05□□□□□ -0.16
SS18-209ENST00000578595 NBEAP1P0C6P0 100 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 ICAM4Q14773 271 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 FAM122CQ6P4D5 195 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 ZNF767PQ75MW2 155 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 RNF141Q8WVD5 230 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 CELA1Q9UNI1 258 aa14.05□□□□□ -0.16
SS18-209ENST00000578595 KMT2CQ8NEZ4 4911 aaKnown RBP14.05□□□□□ -0.16
SS18-209ENST00000578595 DYNC2H1Q8NCM8 4307 aaKnown RBP14.04□□□□□ -0.16
SS18-209ENST00000578595 TMEM189A5PLL7 270 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 NDUFB4O95168 129 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 HTN1P15515 57 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 TSPOP30536 169 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 CDKN1BP46527 198 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 RAB2AP61019 212 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 RPP25LQ8N5L8 163 aaKnown RBP14.04□□□□□ -0.16
SS18-209ENST00000578595 PRELID1Q9Y255 219 aa14.04□□□□□ -0.16
SS18-209ENST00000578595 ZNF705GA8MUZ8 300 aaPredicted RBP14.03□□□□□ -0.16
SS18-209ENST00000578595 M6PRP20645 277 aa14.03□□□□□ -0.16
SS18-209ENST00000578595 Q6ZTC4 211 aa14.03□□□□□ -0.16
SS18-209ENST00000578595 MRPL53Q96EL3 112 aaKnown RBP14.03□□□□□ -0.16
SS18-209ENST00000578595 PHYHIPLQ96FC7 376 aa14.03□□□□□ -0.16
SS18-209ENST00000578595 LINC01587Q99440 93 aa14.03□□□□□ -0.16
SS18-209ENST00000578595 BORCS7-ASMTA0A0B4J1R7 106 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 RNF222A6NCQ9 220 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 ARPC5O15511 151 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 CRXO43186 299 aaPredicted RBP14.02□□□□□ -0.17
SS18-209ENST00000578595 OR10G4Q8NGN3 311 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 OR10G9Q8NGN4 311 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 OR10G7Q8NGN6 311 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 FXYD5Q96DB9 178 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 TNFSF18Q9UNG2 199 aa14.02□□□□□ -0.17
SS18-209ENST00000578595 NPIPB6E9PJ23 425 aa14.01□□□□□ -0.17
SS18-209ENST00000578595 SMLR1H3BR10 107 aa14.01□□□□□ -0.17
SS18-209ENST00000578595 HMGB3O15347 200 aaKnown RBP14.01□□□□□ -0.17
SS18-209ENST00000578595 SPART-AS1P0CW21 52 aa14.01□□□□□ -0.17
SS18-209ENST00000578595 ATP6V0CP27449 155 aa14.01□□□□□ -0.17
SS18-209ENST00000578595 LEPP41159 167 aa14.01□□□□□ -0.17
SS18-209ENST00000578595 YTHDF2Q9Y5A9 579 aaKnown RBP14.01□□□□□ -0.17
SS18-209ENST00000578595 IGKV2-40A0A087WW87 121 aaPredicted RBP14□□□□□ -0.17
SS18-209ENST00000578595 C11orf94C9JXX5 98 aa14□□□□□ -0.17
SS18-209ENST00000578595 IGKV2D-40P01614 121 aaPredicted RBP14□□□□□ -0.17
SS18-209ENST00000578595 CSN1S1P47710 185 aa14□□□□□ -0.17
SS18-209ENST00000578595 CDC34P49427 236 aaPredicted RBP14□□□□□ -0.17
SS18-209ENST00000578595 RANP62826 216 aaKnown RBP14□□□□□ -0.17
SS18-209ENST00000578595 ERCC8Q13216 396 aa14□□□□□ -0.17
SS18-209ENST00000578595 TMEM256Q8N2U0 113 aa14□□□□□ -0.17
SS18-209ENST00000578595 C2CD4CQ8TF44 421 aa14□□□□□ -0.17
SS18-209ENST00000578595 TRAV10A0A0B4J240 114 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 PRM2P04554 102 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 FAM222AQ5U5X8 452 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 RPL7L1Q6DKI1 246 aaKnown RBP13.99□□□□□ -0.17
SS18-209ENST00000578595 ZNF503Q96F45 646 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 PSMG3Q9BT73 122 aaPredicted RBP13.99□□□□□ -0.17
SS18-209ENST00000578595 SH3BGRL3Q9H299 93 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 Q9H3A6 140 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 RPH3ALQ9UNE2 315 aa13.99□□□□□ -0.17
SS18-209ENST00000578595 TEX48A0A1B0GUV7 120 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 IGLL5B9A064 214 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 LY6G6CO95867 125 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 CT45A10P0DMU9 189 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 KIR3DS1Q14943 382 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 C12orf74Q32Q52 190 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 TMEM78Q5T7P6 136 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 GFI1BQ5VTD9 330 aa13.98□□□□□ -0.17
SS18-209ENST00000578595 PQLC2Q6ZP29 291 aa13.97□□□□□ -0.17
SS18-209ENST00000578595 IQCF2Q8IXL9 164 aa13.97□□□□□ -0.17
SS18-209ENST00000578595 GNPNAT1Q96EK6 184 aaPredicted RBP13.97□□□□□ -0.17
SS18-209ENST00000578595 HYLS1Q96M11 299 aa13.97□□□□□ -0.17
SS18-209ENST00000578595 DEFB131BA0A096LNP1 70 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 TRAV12-3A0A0B4J271 114 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 MBP02144 154 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 HTN3P15516 51 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 OR2G3Q8NGZ4 309 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 CMTM2Q8TAZ6 248 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 ODF3Q96PU9 254 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 NIPSNAP3BQ9BS92 247 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 DKK2Q9UBU2 259 aa13.96□□□□□ -0.17
SS18-209ENST00000578595 G3V3Q6 166 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 H7BYZ3 331 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms