RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-208	ENST00000577751	RNF141	Q8WVD5	230 aa		13.93	□□□□□ -0.18
SS18-208	ENST00000577751	PSMG3	Q9BT73	122 aa	Predicted RBP	13.93	□□□□□ -0.18
SS18-208	ENST00000577751	PRELID1	Q9Y255	219 aa		13.93	□□□□□ -0.18
SS18-208	ENST00000577751	GOLT1B	Q9Y3E0	138 aa		13.93	□□□□□ -0.18
SS18-208	ENST00000577751	OR10J4	P0C629	311 aa		13.92	□□□□□ -0.18
SS18-208	ENST00000577751	ATP6V0C	P27449	155 aa		13.92	□□□□□ -0.18
SS18-208	ENST00000577751	OR10J6P	Q8NGY7	276 aa		13.92	□□□□□ -0.18
SS18-208	ENST00000577751	IGHV3OR16-12	A0A075B7B8	117 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	CXorf65	A6NEN9	183 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751		M0R3E3	92 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	OR7C2	O60412	319 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	TAS2R45	P59539	299 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	NANOS2	P60321	138 aa	Known RBP	13.91	□□□□□ -0.18
SS18-208	ENST00000577751	SERF2	P84101	59 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	PMS2P11	Q13670	270 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	KHDC3L	Q587J8	217 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	EXOC3-AS1	Q8N2X6	119 aa		13.91	□□□□□ -0.18
SS18-208	ENST00000577751	RAB2A	P61019	212 aa		13.9	□□□□□ -0.18
SS18-208	ENST00000577751	RPL7L1	Q6DKI1	246 aa	Known RBP	13.9	□□□□□ -0.18
SS18-208	ENST00000577751	OR10G4	Q8NGN3	311 aa		13.9	□□□□□ -0.18
SS18-208	ENST00000577751	OR10G9	Q8NGN4	311 aa		13.9	□□□□□ -0.18
SS18-208	ENST00000577751	OR10G7	Q8NGN6	311 aa		13.9	□□□□□ -0.18
SS18-208	ENST00000577751	AAMDC	Q9H7C9	122 aa		13.9	□□□□□ -0.18
SS18-208	ENST00000577751	PPP1R14D	Q9NXH3	145 aa		13.9	□□□□□ -0.18
SS18-208	ENST00000577751		A0A1W2PPV4	95 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	NUPR2	A6NF83	97 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	NPIPB6	E9PJ23	425 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	SMLR1	H3BR10	107 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	ARPC5	O15511	151 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	INS	P01308	110 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	CDKN1B	P46527	198 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	ICAM4	Q14773	271 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	CEMP1	Q6PRD7	247 aa	Predicted RBP	13.89	□□□□□ -0.19
SS18-208	ENST00000577751	BAP18	Q8IXM2	172 aa		13.89	□□□□□ -0.19
SS18-208	ENST00000577751	TENM2	Q9NT68	2774 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	TRAV12-2	A0A075B6T6	113 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	BORCS7-ASMT	A0A0B4J1R7	106 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	TAAR5	O14804	337 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	EIF3G	O75821	320 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
SS18-208	ENST00000577751	UBE2L3	P68036	154 aa	Known RBP	13.88	□□□□□ -0.19
SS18-208	ENST00000577751	FAM122C	Q6P4D5	195 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	PQLC2	Q6ZP29	291 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	LYPD1	Q8N2G4	141 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	RPP25L	Q8N5L8	163 aa	Known RBP	13.88	□□□□□ -0.19
SS18-208	ENST00000577751	PHLDA1	Q8WV24	401 aa	Predicted RBP	13.88	□□□□□ -0.19
SS18-208	ENST00000577751	GNPNAT1	Q96EK6	184 aa	Predicted RBP	13.88	□□□□□ -0.19
SS18-208	ENST00000577751	PHYHIPL	Q96FC7	376 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	ODF3	Q96PU9	254 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	SH3BGRL3	Q9H299	93 aa		13.88	□□□□□ -0.19
SS18-208	ENST00000577751	TMEM189	A5PLL7	270 aa		13.87	□□□□□ -0.19
SS18-208	ENST00000577751	HBE1	P02100	147 aa		13.87	□□□□□ -0.19
SS18-208	ENST00000577751	MB	P02144	154 aa		13.87	□□□□□ -0.19
SS18-208	ENST00000577751	CT45A10	P0DMU9	189 aa		13.87	□□□□□ -0.19
SS18-208	ENST00000577751	CYTL1	Q9NRR1	136 aa		13.87	□□□□□ -0.19
SS18-208	ENST00000577751	CELA1	Q9UNI1	258 aa		13.87	□□□□□ -0.19
SS18-208	ENST00000577751	JTB	O76095	146 aa		13.86	□□□□□ -0.19
SS18-208	ENST00000577751	RAN	P62826	216 aa	Known RBP	13.86	□□□□□ -0.19
SS18-208	ENST00000577751	RRN3P1	Q2M238	152 aa		13.86	□□□□□ -0.19
SS18-208	ENST00000577751	C9orf47	Q6ZRZ4	202 aa		13.86	□□□□□ -0.19
SS18-208	ENST00000577751	OR11H4	Q8NGC9	324 aa		13.86	□□□□□ -0.19
SS18-208	ENST00000577751	LINC00477	Q96M19	166 aa		13.86	□□□□□ -0.19
SS18-208	ENST00000577751	TMEM208	Q9BTX3	173 aa		13.86	□□□□□ -0.19
SS18-208	ENST00000577751	HMSD	A8MTL9	139 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	STAG3L2	P0CL84	134 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	STAG3L3	P0CL85	134 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	TSPO	P30536	169 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	CDC34	P49427	236 aa	Predicted RBP	13.85	□□□□□ -0.19
SS18-208	ENST00000577751	ERCC8	Q13216	396 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	ZNF345	Q14585	488 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	KIR3DS1	Q14943	382 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	TMEM256	Q8N2U0	113 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	FAM19A4	Q96LR4	140 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	C20orf144	Q9BQM9	153 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	AGPAT4-IT1	Q9H0P7	198 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751		Q9H3A6	140 aa		13.85	□□□□□ -0.19
SS18-208	ENST00000577751	LCE6A	A0A183	80 aa		13.84	□□□□□ -0.19
SS18-208	ENST00000577751	LOC102723971	A0A1B0GUV8	181 aa		13.84	□□□□□ -0.19
SS18-208	ENST00000577751		Q6ZNX1	250 aa		13.84	□□□□□ -0.19
SS18-208	ENST00000577751	KCNRG	Q8N5I3	272 aa		13.84	□□□□□ -0.19
SS18-208	ENST00000577751	RAB24	Q969Q5	203 aa		13.84	□□□□□ -0.19
SS18-208	ENST00000577751	KLK5	Q9Y337	293 aa	Predicted RBP	13.84	□□□□□ -0.19
SS18-208	ENST00000577751	HMGB3	O15347	200 aa	Known RBP	13.83	□□□□□ -0.2
SS18-208	ENST00000577751	PRM2	P04554	102 aa		13.83	□□□□□ -0.2
SS18-208	ENST00000577751	LEP	P41159	167 aa		13.83	□□□□□ -0.2
SS18-208	ENST00000577751	C12orf74	Q32Q52	190 aa		13.83	□□□□□ -0.2
SS18-208	ENST00000577751	GFI1B	Q5VTD9	330 aa		13.83	□□□□□ -0.2
SS18-208	ENST00000577751	SUN5	Q8TC36	379 aa		13.83	□□□□□ -0.2
SS18-208	ENST00000577751	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	13.82	□□□□□ -0.2
SS18-208	ENST00000577751	ZNF705G	A8MUZ8	300 aa	Predicted RBP	13.82	□□□□□ -0.2
SS18-208	ENST00000577751	C11orf94	C9JXX5	98 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	IGKV2D-40	P01614	121 aa	Predicted RBP	13.82	□□□□□ -0.2
SS18-208	ENST00000577751	SPART-AS1	P0CW21	52 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	ARL14EPL	P0DKL9	152 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	EMP1	P54849	157 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751		Q6ZTC4	211 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	LINC01587	Q99440	93 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	VGLL1	Q99990	258 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	DKK2	Q9UBU2	259 aa		13.82	□□□□□ -0.2
SS18-208	ENST00000577751	RBAKDN	A6NC62	111 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	CRISP2	P16562	243 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms