RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 DPPA3Q6W0C5 159 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 IQCF2Q8IXL9 164 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 EXOC3-AS1Q8N2X6 119 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 SUN5Q8TC36 379 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 MBD3L1Q8WWY6 194 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 MAP1LC3BQ9GZQ8 125 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 TMPRSS5Q9H3S3 457 aa6.32□□□□□ -1.4
NUP88-211ENST00000575976 SAV1Q9H4B6 383 aaPredicted RBP6.32□□□□□ -1.4
NUP88-211ENST00000575976 A0A0J9YX75 114 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 PRAC2D3DTV9 90 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 H3BMM0 161 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 M0R3E3 92 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 ZNF705DP0CH99 300 aaPredicted RBP6.31□□□□□ -1.4
NUP88-211ENST00000575976 ZNF705BP0CI00 300 aaPredicted RBP6.31□□□□□ -1.4
NUP88-211ENST00000575976 RAB5CP51148 216 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 EBLN2Q6P2I7 272 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 FOXI2Q6ZQN5 318 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 TRPT1Q86TN4 253 aaKnown RBP6.31□□□□□ -1.4
NUP88-211ENST00000575976 STHQ8IWL8 128 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 LYPD1Q8N2G4 141 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 SFT2D1Q8WV19 159 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 RPUSD4Q96CM3 377 aaKnown RBP6.31□□□□□ -1.4
NUP88-211ENST00000575976 ASCL2Q99929 193 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 Q9H3A6 140 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 AAMDCQ9H7C9 122 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 TMEM167BQ9NRX6 74 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 CLEC5AQ9NY25 188 aa6.31□□□□□ -1.4
NUP88-211ENST00000575976 BIRC6Q9NR09 4857 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 A0A1B0GV50 99 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 PGPA6NDG6 321 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 IGKV3-20P01619 116 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 H2AFB1P0C5Y9 115 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 HLA-DRB4P13762 266 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 SBSPONQ8IVN8 264 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 OR4B1Q8NGF8 309 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 OR8A1Q8NGG7 326 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 MRPL53Q96EL3 112 aaKnown RBP6.3□□□□□ -1.4
NUP88-211ENST00000575976 OTORQ9NRC9 128 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 PRELID1Q9Y255 219 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 HLA-DRB4X5D2U9 266 aa6.3□□□□□ -1.4
NUP88-211ENST00000575976 PRSS47A8MTI9 375 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 ZNF705EA8MWA4 302 aaPredicted RBP6.29□□□□□ -1.4
NUP88-211ENST00000575976 DUSP14O95147 198 aaKnown RBP6.29□□□□□ -1.4
NUP88-211ENST00000575976 CNN1P51911 297 aaKnown RBP6.29□□□□□ -1.4
NUP88-211ENST00000575976 UBE2G2P60604 165 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 SUMO1P63165 101 aaKnown RBP6.29□□□□□ -1.4
NUP88-211ENST00000575976 CCL20P78556 96 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 HIST1H1AQ02539 215 aaPredicted RBP6.29□□□□□ -1.4
NUP88-211ENST00000575976 HAGHQ16775 308 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 CFAP161Q6P656 301 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 B9D2Q9BPU9 175 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 CSTL1Q9H114 145 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 DNAH3Q8TD57 4116 aa6.29□□□□□ -1.4
NUP88-211ENST00000575976 TENM3Q9P273 2699 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 IGKV2-40A0A087WW87 121 aaPredicted RBP6.28□□□□□ -1.4
NUP88-211ENST00000575976 A0A1W2PRE2 83 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 FAM74A7A6NL05 159 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 A8MTW9 85 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 IGKV2D-40P01614 121 aaPredicted RBP6.28□□□□□ -1.4
NUP88-211ENST00000575976 SLC25A5P05141 298 aaKnown RBP6.28□□□□□ -1.4
NUP88-211ENST00000575976 APOC4P55056 127 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 FXYD7P58549 80 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 ERCC8Q13216 396 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 TEX261Q6UWH6 196 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 OR10J6PQ8NGY7 276 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 CLUHP3Q96NS8 147 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 SLC35B3Q9H1N7 401 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 RPH3ALQ9UNE2 315 aa6.28□□□□□ -1.4
NUP88-211ENST00000575976 YTHDF2Q9Y5A9 579 aaKnown RBP6.28□□□□□ -1.4
NUP88-211ENST00000575976 TRAV1-1A0A0B4J248 108 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 KIR2DL5BA0A0G2JN68 375 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 KIR2DL5BA0A0G2JPC4 375 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 GGTLC3B5MD39 225 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 DIRC3C9JPN6 131 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 NPIPB6E9PJ23 425 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 TEX46H3BTG2 121 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 PAGE4O60829 102 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 CA1P00915 261 aaPredicted RBP6.27□□□□□ -1.41
NUP88-211ENST00000575976 HBE1P02100 147 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 GIG44P09565 113 aaPredicted RBP6.27□□□□□ -1.41
NUP88-211ENST00000575976 CSN1S1P47710 185 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 GNG5P63218 68 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 BLOC1S1P78537 153 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 MORN3Q6PF18 240 aaPredicted RBP6.27□□□□□ -1.41
NUP88-211ENST00000575976 AMTNQ6UX39 209 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 KIR2DL5AQ8N109 375 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 ZNF680Q8NEM1 530 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 KIR2DL5BQ8NHK3 375 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 CMTM2Q8TAZ6 248 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 RXFP4Q8TDU9 374 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 AGPAT4-IT1Q9H0P7 198 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 AGRNO00468 2067 aa6.27□□□□□ -1.41
NUP88-211ENST00000575976 UBE2CO00762 179 aa6.26□□□□□ -1.41
NUP88-211ENST00000575976 CT45A10P0DMU9 189 aa6.26□□□□□ -1.41
NUP88-211ENST00000575976 ATP5G3P48201 142 aa6.26□□□□□ -1.41
NUP88-211ENST00000575976 NUTF2P61970 127 aaKnown RBP6.26□□□□□ -1.41
NUP88-211ENST00000575976 CST9LP1Q5W188 147 aa6.26□□□□□ -1.41
NUP88-211ENST00000575976 C9orf47Q6ZRZ4 202 aa6.26□□□□□ -1.41
NUP88-211ENST00000575976 GOLT1AQ6ZVE7 132 aa6.26□□□□□ -1.41
NUP88-211ENST00000575976 C5orf17Q8NAS9 161 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms