RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SP6Q3SY56 376 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 RPL39P5Q59GN2 51 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 HCP5Q6MZN7 132 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 SLC35E3Q7Z769 313 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 SLC25A42Q86VD7 318 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 DRAM1Q8N682 238 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 ZDHHC22Q8N966 263 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 NDFIP1Q9BT67 221 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 MRPL16Q9NX20 251 aaKnown RBP5.23□□□□□ -1.57
VPS53-217ENST00000575100 XCL2Q9UBD3 114 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 IGHV4OR15-8A0A075B7B6 117 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 SAA2-SAA4A0A096LPE2 208 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 A0A0B4J2A0 478 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 CTSDP07339 412 aaPredicted RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 SAA2P0DJI9 122 aaPredicted RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 COX7A1P24310 79 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 RPL30P62888 115 aaKnown RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 PRR3P79522 188 aaKnown RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 EIF4EBP1Q13541 118 aaPredicted RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 SVBPQ8N300 66 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 SLC35E1Q96K37 410 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 TMEM126AQ9H061 195 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 TMEM133Q9H2Q1 129 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 HEXA-AS1Q9H8Q6 139 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 SHPKQ9UHJ6 478 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 IGHV2-26A0A0B4J1V2 119 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 TMEM189A5PLL7 270 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 CRYM-AS1A6NIL9 109 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 PHOX2AO14813 284 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 PGLYRP1O75594 196 aaPredicted RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 IGLV1-47P01700 117 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 PRSS1P07477 247 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 CXCL3P19876 107 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 RUSC1-AS1Q66K80 236 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 VMO1Q7Z5L0 202 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 ZNF645Q8N7E2 425 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 RTN4IP1Q8WWV3 396 aaPredicted RBP5.22□□□□□ -1.57
VPS53-217ENST00000575100 DCUN1D4Q92564 292 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 RNF185Q96GF1 192 aa5.22□□□□□ -1.57
VPS53-217ENST00000575100 LOC102724200A0A096LPH7 203 aaPredicted RBP5.21□□□□□ -1.58
VPS53-217ENST00000575100 A0A0U1RQV1 116 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 RBFOX3A6NFN3 312 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 IL5P05113 134 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 MSMBP08118 114 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 OR5AC1P0C628 307 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 PROK1P58294 105 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 RHEBQ15382 184 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 ZNF343Q6P1L6 599 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 NEGR1Q7Z3B1 354 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 OR11H7Q8NGC8 314 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 OR10D4PQ8NGN7 298 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 OR51H1Q8NH63 302 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 GALNT14Q96FL9 552 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 KRTAP4-12Q9BQ66 201 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 PSMG3Q9BT73 122 aaPredicted RBP5.21□□□□□ -1.58
VPS53-217ENST00000575100 LAMTOR2Q9Y2Q5 125 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 INSIG2Q9Y5U4 225 aa5.21□□□□□ -1.58
VPS53-217ENST00000575100 TEX48A0A1B0GUV7 120 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 A0A1B0GXF2 115 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 COLCA2A8K830 154 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 M0R1W7 72 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 RBP4P02753 201 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 PRSS2P07478 247 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SULT1A3P0DMM9 295 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SULT1A4P0DMN0 295 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 PRTN3P24158 256 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 CD34P28906 385 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 HIST1H1AQ02539 215 aaPredicted RBP5.2□□□□□ -1.58
VPS53-217ENST00000575100 PAX8Q06710 450 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 JOSD1Q15040 202 aaPredicted RBP5.2□□□□□ -1.58
VPS53-217ENST00000575100 PEA15Q15121 130 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 ABCA11PQ4W5N1 156 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 TCTEX1D1Q8N7M0 179 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.2□□□□□ -1.58
VPS53-217ENST00000575100 C11orf72Q8NBR9 251 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 ZNF431Q8TF32 576 aaPredicted RBP5.2□□□□□ -1.58
VPS53-217ENST00000575100 GPR146Q96CH1 333 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 MALSU1Q96EH3 234 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 FMC1Q96HJ9 113 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 HIST1H4GQ99525 98 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 HSPB9Q9BQS6 159 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SMIM3Q9BZL3 60 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 NAA60Q9H7X0 242 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SOX21Q9Y651 276 aaPredicted RBP5.2□□□□□ -1.58
VPS53-217ENST00000575100 WNK2Q9Y3S1 2297 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 IGHV3OR16-10A0A075B7F0 116 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 C3orf85A0A1B0GTC6 90 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 ODF3BA8MYP8 253 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SIX6O95475 246 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SFT2D2O95562 160 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 IGKV1-39P01597 117 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 IGKV1D-39P04432 117 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 SMIM17P0DL12 118 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 NPY1RP25929 384 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 S100A10P60903 97 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 TTC32Q5I0X7 151 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 ZFAND6Q6FIF0 208 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 DYNAPQ8N1N2 210 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 OR10J6PQ8NGY7 276 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 OR9G1Q8NH87 305 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms