RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 H2AFB2P0C5Z0 115 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 RAB32Q13637 225 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 S100A7AQ86SG5 101 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 LINC00612Q8N6U2 182 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 C15orf53Q8NAA6 179 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 ZNRF2Q8NHG8 242 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 LYRM2Q9NU23 88 aaPredicted RBP12.65□□□□□ -0.38
CHD3-214ENST00000572579 UQCC1Q9NVA1 299 aa12.65□□□□□ -0.38
CHD3-214ENST00000572579 NDUFB4O95168 129 aa12.64□□□□□ -0.39
CHD3-214ENST00000572579 RPL29P47914 159 aaKnown RBP12.64□□□□□ -0.39
CHD3-214ENST00000572579 CHAC2Q8WUX2 184 aa12.64□□□□□ -0.39
CHD3-214ENST00000572579 RNF141Q8WVD5 230 aa12.64□□□□□ -0.39
CHD3-214ENST00000572579 C16orf74Q96GX8 76 aa12.64□□□□□ -0.39
CHD3-214ENST00000572579 SLC39A9Q9NUM3 307 aa12.64□□□□□ -0.39
CHD3-214ENST00000572579 LINC00588Q9Y4M8 146 aa12.64□□□□□ -0.39
CHD3-214ENST00000572579 TIMM8BQ9Y5J9 83 aaPredicted RBP12.64□□□□□ -0.39
CHD3-214ENST00000572579 H7BYZ3 331 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 NUDT3O95989 172 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 ATP5G1P05496 136 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 ATP5G3P48201 142 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 SULT1A1P50225 295 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 GCSAMLQ5JQS6 135 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 ZNF493Q6ZR52 646 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 TMEM263Q8WUH6 116 aaKnown RBP12.63□□□□□ -0.39
CHD3-214ENST00000572579 CCDC32Q9BV29 185 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 NDUFA13Q9P0J0 144 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 RNF24Q9Y225 148 aa12.63□□□□□ -0.39
CHD3-214ENST00000572579 UBE2L5PA0A1B0GUS4 154 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 NPIPB6E9PJ23 425 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 J3KRW8 73 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 M0R3E3 92 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 HOXA5P20719 270 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 S100A10P60903 97 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 ERCC8Q13216 396 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 C1orf134Q5TEV5 83 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 Q6ZRG5 221 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 OR10J6PQ8NGY7 276 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 PXMP4Q9Y6I8 212 aa12.62□□□□□ -0.39
CHD3-214ENST00000572579 TRBV19A0A075B6N1 114 aa12.61□□□□□ -0.39
CHD3-214ENST00000572579 MED14OSP0DP75 135 aa12.61□□□□□ -0.39
CHD3-214ENST00000572579 S100A11P31949 105 aa12.61□□□□□ -0.39
CHD3-214ENST00000572579 FAM3BP58499 235 aaPredicted RBP12.61□□□□□ -0.39
CHD3-214ENST00000572579 RAB31Q13636 194 aa12.61□□□□□ -0.39
CHD3-214ENST00000572579 ZNF575Q86XF7 245 aa12.61□□□□□ -0.39
CHD3-214ENST00000572579 C20orf144Q9BQM9 153 aa12.61□□□□□ -0.39
CHD3-214ENST00000572579 TRAV12-3A0A0B4J271 114 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 FAM240BA0A1B0GVZ2 78 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 SIX6O95475 246 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 PYYP10082 97 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 IFITM3Q01628 133 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 NHLH2Q02577 135 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 TNP2Q05952 138 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 OR1L4Q8NGR5 311 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 FAM19A4Q96LR4 140 aa12.6□□□□□ -0.39
CHD3-214ENST00000572579 NBDYA0A0U1RRE5 68 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 H0YIZ8 118 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 FGF7P21781 194 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 BAXQ07812 192 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 ASAH1Q13510 395 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 GUK1Q16774 197 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 Q6ZQT7 251 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 FAM167A-AS1Q96KT0 104 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 ODF3Q96PU9 254 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 TMEM14CQ9P0S9 112 aa12.59□□□□□ -0.39
CHD3-214ENST00000572579 ZNF253O75346 499 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 ZNF324O75467 553 aaPredicted RBP12.58□□□□□ -0.4
CHD3-214ENST00000572579 APOBP04114 4563 aaKnown RBP12.58□□□□□ -0.4
CHD3-214ENST00000572579 PVALBP20472 110 aaPredicted RBP12.58□□□□□ -0.4
CHD3-214ENST00000572579 CD300CQ08708 224 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 EXOC3-AS1Q8N2X6 119 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 ATG101Q9BSB4 218 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 SLC25A2Q9BXI2 301 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 NPCDR1Q9BY65 106 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 KRTAP4-5Q9BYR2 181 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 AGPAT4-IT1Q9H0P7 198 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 DNAH5Q8TE73 4624 aa12.58□□□□□ -0.4
CHD3-214ENST00000572579 TRAV26-1A0A087WT03 109 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 GAGE12BA1L429 117 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 GAGE7O76087 117 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 GAGE12FP0CL80 117 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 GAGE12GP0CL81 117 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 GAGE12IP0CL82 117 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 HIST1H1EP10412 219 aaKnown RBP12.57□□□□□ -0.4
CHD3-214ENST00000572579 OR5I1Q13606 314 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 C11orf72Q8NBR9 251 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 THAP6Q8TBB0 222 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 PFDN5Q99471 154 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 KRTAP1-5Q9BYS1 174 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 GPN1Q9HCN4 374 aaPredicted RBP12.57□□□□□ -0.4
CHD3-214ENST00000572579 OR5AC2Q9NZP5 309 aa12.57□□□□□ -0.4
CHD3-214ENST00000572579 A0A0J9YY99 117 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 KLLNB2CW77 178 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 LEPP41159 167 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 ATP6V1FQ16864 119 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 Q6ZTI0 123 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 MIR17HGQ75NE6 70 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 SSX7Q7RTT5 188 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 STX12Q86Y82 276 aa12.56□□□□□ -0.4
CHD3-214ENST00000572579 MRPL53Q96EL3 112 aaKnown RBP12.56□□□□□ -0.4
CHD3-214ENST00000572579 HBG1P69891 147 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms