RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 RPUSD4Q96CM3 377 aaKnown RBP3.86□□□□□ -1.79
VPS53-208ENST00000570650 ST6GAL2Q96JF0 529 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 TMEM222Q9H0R3 208 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 GSN-AS1Q9NRJ2 163 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 RCL1Q9Y2P8 373 aaKnown RBP3.86□□□□□ -1.79
VPS53-208ENST00000570650 TMEM56-RWDD3S4R434 201 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 A0A087X0K7 114 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 TRAV12-3A0A0B4J271 114 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 IBA57-AS1B1ANH7 110 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 H3BRN7 92 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 J3KRW8 73 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 IGHV3-53P01767 116 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 MT1HL1P0DM35 61 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 SULT1A3P0DMM9 295 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 SULT1A4P0DMN0 295 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 PRB4P10163 310 aaPredicted RBP3.85□□□□□ -1.79
VPS53-208ENST00000570650 AQP4P55087 323 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 MEF2DQ14814 521 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 RNASE10Q5GAN6 216 aaKnown RBP3.85□□□□□ -1.79
VPS53-208ENST00000570650 CCDC190Q86UF4 302 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 CROCCP3Q8IVE0 287 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 SELENOHQ8IZQ5 122 aaKnown RBP3.85□□□□□ -1.79
VPS53-208ENST00000570650 SAMD12Q8N8I0 201 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 Q8N9P0 234 aaPredicted RBP3.85□□□□□ -1.79
VPS53-208ENST00000570650 C11orf72Q8NBR9 251 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 BPIFCQ8NFQ6 507 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 OR13C8Q8NGS7 320 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 OR1S1Q8NH92 325 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 LRRC20Q8TCA0 184 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 DTD1Q8TEA8 209 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 GLYATL2Q8WU03 294 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 PCNPQ8WW12 178 aaKnown RBP3.85□□□□□ -1.79
VPS53-208ENST00000570650 CHAC1Q9BUX1 264 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 PARD6GQ9BYG4 376 aaPredicted RBP3.85□□□□□ -1.79
VPS53-208ENST00000570650 Q9HAA7 133 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 HHLA3Q9XRX5 114 aa3.85□□□□□ -1.79
VPS53-208ENST00000570650 LRP2P98164 4655 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 TEX13DA0A0J9YY54 714 aaPredicted RBP3.84□□□□□ -1.79
VPS53-208ENST00000570650 LOC100506127A0A0U1RQW1 187 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 E5RGE8 158 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 K7EQD1 137 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 SPINK4O60575 86 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 TNFAIP8O95379 198 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 IGLV2-8P01709 118 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 GATA2P23769 480 aaPredicted RBP3.84□□□□□ -1.79
VPS53-208ENST00000570650 LEPP41159 167 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 TCL1AP56279 114 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 RPL37AP61513 92 aaKnown RBP3.84□□□□□ -1.79
VPS53-208ENST00000570650 RAB11AP62491 216 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 ZNF415Q09FC8 603 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 ACOT6Q3I5F7 207 aaPredicted RBP3.84□□□□□ -1.79
VPS53-208ENST00000570650 TDRG1Q3Y452 100 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 LINC01556Q5JQF7 62 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 TMEM268Q5VZI3 342 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 TMEM182Q6ZP80 229 aaPredicted RBP3.84□□□□□ -1.79
VPS53-208ENST00000570650 SNX29P2Q8IUI4 249 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 NRACQ8N912 160 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 CIRBP-AS1Q8TBR5 109 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 ODF3Q96PU9 254 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 VGLL1Q99990 258 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 SHANK2-AS3Q9BTD1 123 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 TM2D2Q9BX73 214 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 MRPL32Q9BYC8 188 aaKnown RBP3.84□□□□□ -1.79
VPS53-208ENST00000570650 KRTAP9-8Q9BYQ0 159 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 RBKSQ9H477 322 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 NAA60Q9H7X0 242 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 DNAJC4Q9NNZ3 241 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 HSPB7Q9UBY9 170 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 KLF12Q9Y4X4 402 aa3.84□□□□□ -1.79
VPS53-208ENST00000570650 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 TRGV4A0A0C4DH28 118 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 IGHV3-38A0A0C4DH36 116 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 SMIM31A0A1B0GVY4 71 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 ORM1P02763 201 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 CXCL2P19875 107 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 TBPP20226 339 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 CCR6P51684 374 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 HNRNPA3P51991 378 aaKnown RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 GABARAPL2P60520 117 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 WFDC2Q14508 124 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 SMCO1Q147U7 214 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 ANXA2RQ3ZCQ2 193 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 IBA57Q5T440 356 aaKnown RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 PXDC1Q5TGL8 231 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 LCN15Q6UWW0 184 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 EIF4E3Q8N5X7 224 aaKnown RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 ZBTB8BQ8NAP8 495 aaPredicted RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 TERB2Q8NHR7 220 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 MARCH1Q8TCQ1 289 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 ZNF431Q8TF32 576 aaPredicted RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 CNBD2Q96M20 576 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 TXNDC17Q9BRA2 123 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 SLC50A1Q9BRV3 221 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 C14orf166Q9Y224 244 aaKnown RBP3.83□□□□□ -1.8
VPS53-208ENST00000570650 HIGD1AQ9Y241 93 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 TNXBP22105 4242 aa3.83□□□□□ -1.8
VPS53-208ENST00000570650 LINC00854A0A1B0GVQ3 168 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 C7orf71A4D174 169 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 CRYM-AS1A6NIL9 109 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 PMS2P5A8MQ11 134 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms