RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DAZAP1Q96EP5 407 aaKnown RBP6.12□□□□□ -1.43
VPS39-213ENST00000570062 NDFIP1Q9BT67 221 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 KRTAP4-2Q9BYR5 136 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 ZNF331Q9NQX6 463 aaPredicted RBP6.12□□□□□ -1.43
VPS39-213ENST00000570062 IGHV7-4-1A0A0J9YVY3 117 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 CLPSL1A2RUU4 121 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 FAM231BA6NCW3 169 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 COLCA2A8K830 154 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 A8MWP6 167 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 DIRC3C9JPN6 131 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 LY6G6DO95868 133 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 LTAP01374 205 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 IGHV3-11P01762 117 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 ID1P41134 155 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 PAFAH1B2P68402 229 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 PSG3Q16557 428 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 CT83Q5H943 113 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 IBA57Q5T440 356 aaKnown RBP6.11□□□□□ -1.43
VPS39-213ENST00000570062 Q6ZSV7 163 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 IL17RELQ6ZVW7 336 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 C1QL4Q86Z23 238 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 CBLN2Q8IUK8 224 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 TMEM183AQ8IXX5 376 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.11□□□□□ -1.43
VPS39-213ENST00000570062 C4orf3Q8WVX3 66 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 GLMPQ8WWB7 406 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 IGF2BP2-AS1Q96M15 143 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 SAV1Q9H4B6 383 aaPredicted RBP6.11□□□□□ -1.43
VPS39-213ENST00000570062 ZNF492Q9P255 531 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 MLXQ9UH92 298 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 SMPXQ9UHP9 88 aa6.11□□□□□ -1.43
VPS39-213ENST00000570062 XKRY2A2RUG3 117 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 C1orf196B1AJZ1 125 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 LINC01619G3V211 115 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 OVOL1O14753 267 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 TCF21O43680 179 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 PFN1P07737 140 aaKnown RBP6.1□□□□□ -1.43
VPS39-213ENST00000570062 CT45A10P0DMU9 189 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 MGST1P10620 155 aaKnown RBP6.1□□□□□ -1.43
VPS39-213ENST00000570062 RAB5AP20339 215 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 RAB5BP61020 215 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 FLI1Q01543 452 aaPredicted RBP6.1□□□□□ -1.43
VPS39-213ENST00000570062 LCN12Q6JVE5 192 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 COX8CQ7Z4L0 72 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 FAM24BQ8N5W8 94 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 OR4B1Q8NGF8 309 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 C16orf92Q96LL3 132 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 PYGO2Q9BRQ0 406 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 DERL1Q9BUN8 251 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 MLST8Q9BVC4 326 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 RHPN1-AS1Q9BWJ2 59 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 NRN1Q9NPD7 142 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 PPP1R14DQ9NXH3 145 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 LENEPQ9Y5L5 61 aa6.1□□□□□ -1.43
VPS39-213ENST00000570062 FBN1P35555 2871 aaKnown RBP6.1□□□□□ -1.43
VPS39-213ENST00000570062 TRBV20OR9-2A0A075B6H5 130 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 TRAV2A0A0B4J234 112 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 IGHV3-35A0A0C4DH35 117 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 TRBV7-9A0A0J9YWB2 115 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 A8MWL6 223 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 CHEK1O14757 476 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 GATCO43716 136 aaKnown RBP6.09□□□□□ -1.43
VPS39-213ENST00000570062 FAM3BP58499 235 aaPredicted RBP6.09□□□□□ -1.43
VPS39-213ENST00000570062 KLF5Q13887 457 aaPredicted RBP6.09□□□□□ -1.43
VPS39-213ENST00000570062 ELOBQ15370 118 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 RASL11AQ6T310 242 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 GOLT1AQ6ZVE7 132 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 EXOC3-AS1Q8N2X6 119 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 OR1N2Q8NGR9 330 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 FAM210BQ96KR6 192 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 IL36BQ9NZH7 164 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 PSG8Q9UQ74 426 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 TSSC4Q9Y5U2 329 aaPredicted RBP6.09□□□□□ -1.43
VPS39-213ENST00000570062 SMAD5-AS1Q9Y6J3 95 aa6.09□□□□□ -1.43
VPS39-213ENST00000570062 CCDC168Q8NDH2 2452 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 P01737 135 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 TYMSP04818 313 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 CMC4P56277 68 aaPredicted RBP6.08□□□□□ -1.44
VPS39-213ENST00000570062 RPS20P60866 119 aaKnown RBP6.08□□□□□ -1.44
VPS39-213ENST00000570062 SNRPD3P62318 126 aaKnown RBP6.08□□□□□ -1.44
VPS39-213ENST00000570062 RPL11P62913 178 aaKnown RBP6.08□□□□□ -1.44
VPS39-213ENST00000570062 SRSF2Q01130 221 aaKnown RBP6.08□□□□□ -1.44
VPS39-213ENST00000570062 TMEM95Q3KNT9 176 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 KRTAP19-4Q3LI73 84 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 TMEM78Q5T7P6 136 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 Q6AWC8 147 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 UNQ9165/PRO28630Q6UXU0 137 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 Q86TA4 180 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 OR10J6PQ8NGY7 276 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 LINC00477Q96M19 166 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 GFRA4Q9GZZ7 299 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 SRD5A3Q9H8P0 318 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 CR1P17927 2039 aa6.08□□□□□ -1.44
VPS39-213ENST00000570062 ZNF705GA8MUZ8 300 aaPredicted RBP6.07□□□□□ -1.44
VPS39-213ENST00000570062 K7EN84 100 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 CRLF1O75462 422 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 IGLV2-8P01709 118 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 TRBV12-3P01733 135 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 MT-ND6P03923 174 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms