RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RELNP78509 3460 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 ORM1P02763 201 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 CD7P09564 240 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 HIGD1BQ9P298 99 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 DUSP14O95147 198 aaKnown RBP8.67□□□□□ -1.02
CLK3-226ENST00000569406 ATP1A1-AS1Q5TC04 95 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 TREML4Q6UXN2 200 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 TRPT1Q86TN4 253 aaKnown RBP8.67□□□□□ -1.02
CLK3-226ENST00000569406 INTS1Q8N201 2190 aaKnown RBP8.67□□□□□ -1.02
CLK3-226ENST00000569406 PMS2P5A8MQ11 134 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 EFNB3Q15768 340 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 GNG12Q9UBI6 72 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 LOXL1Q08397 574 aaPredicted RBP8.66□□□□□ -1.02
CLK3-226ENST00000569406 MIR17HGQ75NE6 70 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 TRAV2A0A0B4J234 112 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 LINC01549A6NIU2 74 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 HSPE1P61604 102 aaKnown RBP8.66□□□□□ -1.02
CLK3-226ENST00000569406 Q6ZS92 163 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 ATP5L2Q7Z4Y8 100 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 Q8N7P7 452 aa8.66□□□□□ -1.02
CLK3-226ENST00000569406 ARFGEF3Q5TH69 2177 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 APC2O95996 2303 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 IGHG4P01861 327 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 CECR9P0C854 216 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 FAM57AQ8TBR7 257 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 OTOGLQ3ZCN5 2332 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 IGKV1-6A0A0C4DH72 117 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 RBAKDNA6NC62 111 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 C15orf62A8K5M9 175 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 C20orf204Q6ZNR8 217 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 TMEM219Q86XT9 240 aa8.65□□□□□ -1.02
CLK3-226ENST00000569406 A0A1B0GXF2 115 aa8.65□□□□□ -1.03
CLK3-226ENST00000569406 IFI27P40305 119 aaPredicted RBP8.65□□□□□ -1.03
CLK3-226ENST00000569406 GAGE2AQ6NT46 116 aa8.65□□□□□ -1.03
CLK3-226ENST00000569406 ABHD12Q8N2K0 398 aa8.65□□□□□ -1.03
CLK3-226ENST00000569406 TRAV8-4A0A0B4J246 113 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 ZNF415Q09FC8 603 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 C3orf36Q3SXR2 165 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 IFI27L1Q96BM0 104 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 MGST2Q99735 147 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 V9GYY9 64 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 A0A1B0GX51 115 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 MORN3Q6PF18 240 aaPredicted RBP8.64□□□□□ -1.03
CLK3-226ENST00000569406 SPRR3Q9UBC9 169 aa8.64□□□□□ -1.03
CLK3-226ENST00000569406 ZNF56Q15929 161 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 FAM214BQ7L5A3 538 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 CNEP1R1Q8N9A8 125 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 PRNDQ9UKY0 176 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 TNCP24821 2201 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 ZNF493Q6ZR52 646 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 MOB3BQ86TA1 216 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 RPRMLQ8N4K4 120 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 BAALCQ8WXS3 180 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 IGF2BP2-AS1Q96M15 143 aa8.63□□□□□ -1.03
CLK3-226ENST00000569406 PTPRBP23467 1997 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 TFF1P04155 84 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 FGF12P61328 243 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 C3orf22Q8N5N4 141 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 TMEM167BQ9NRX6 74 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 RS1O15537 224 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 PRSS1P07477 247 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 PMVKQ15126 192 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 SPRNQ5BIV9 151 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 WDR86Q86TI4 376 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 OR9G1Q8NH87 305 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 DEFB127Q9H1M4 99 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 FCGR3BO75015 233 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 LINC00205P59089 165 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 ERVK-16P61578 105 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 NTN5Q8WTR8 489 aaPredicted RBP8.62□□□□□ -1.03
CLK3-226ENST00000569406 CALYQ9NYX4 217 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 ACACAQ13085 2346 aa8.62□□□□□ -1.03
CLK3-226ENST00000569406 TRGV11A0A075B6L2 103 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 TCL1BO95988 128 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 IGLV2-14P01704 120 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 AAMDCQ9H7C9 122 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 ABCA4P78363 2273 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 WT1P19544 449 aaPredicted RBP8.61□□□□□ -1.03
CLK3-226ENST00000569406 ZNF826PQ6ZT77 177 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 ODF3Q96PU9 254 aa8.61□□□□□ -1.03
CLK3-226ENST00000569406 A0A1W2PRX2 142 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 SLC25A20O43772 301 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 MPDU1O75352 247 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 HOXA4Q00056 320 aaPredicted RBP8.6□□□□□ -1.03
CLK3-226ENST00000569406 LY6DQ14210 128 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 LYRM7Q5U5X0 104 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 FAM53AQ6NSI3 398 aaPredicted RBP8.6□□□□□ -1.03
CLK3-226ENST00000569406 VKORC1L1Q8N0U8 176 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 MAPKAPK5-AS1Q8N8E1 139 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 MYMXA0A1B0GTQ4 84 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 ZNF503Q96F45 646 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 TMEM160Q9NX00 188 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 AMMECR1Q9Y4X0 333 aaPredicted RBP8.6□□□□□ -1.03
CLK3-226ENST00000569406 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.6□□□□□ -1.03
CLK3-226ENST00000569406 NDUFS7O75251 213 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 DRAM1Q8N682 238 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 TMEM158Q8WZ71 300 aa8.6□□□□□ -1.03
CLK3-226ENST00000569406 A0A096LNJ9 63 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 C15orf65H3BRN8 121 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 P01737 135 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms