RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	M6PR	P20645	277 aa		11.75	□□□□□ -0.53
CLN3-231	ENST00000568422	GFI1B	Q5VTD9	330 aa		11.75	□□□□□ -0.53
CLN3-231	ENST00000568422	OR1L4	Q8NGR5	311 aa		11.75	□□□□□ -0.53
CLN3-231	ENST00000568422	GNPNAT1	Q96EK6	184 aa	Predicted RBP	11.75	□□□□□ -0.53
CLN3-231	ENST00000568422	C16orf90	A8MZG2	172 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	SNURFL	B1AK76	121 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	CDK2AP2	O75956	126 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	RLN2	P04090	185 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	SNRPC	P09234	159 aa	Known RBP	11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	LEP	P41159	167 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	OR5I1	Q13606	314 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	TTC32	Q5I0X7	151 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	MORN5	Q5VZ52	161 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	NRARP	Q7Z6K4	114 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	RXFP4	Q8TDU9	374 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	PFDN5	Q99471	154 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	C20orf85	Q9H1P6	137 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422		Q9H8V8	135 aa		11.74	□□□□□ -0.53
CLN3-231	ENST00000568422	ABCA13	Q86UQ4	5058 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	TRAV26-1	A0A087WT03	109 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	PRAC2	D3DTV9	90 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422		H3BQ15	152 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	ZNF253	O75346	499 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	PRB4	P10163	310 aa	Predicted RBP	11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	BCAP31	P51572	246 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	CAV2	P51636	162 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	KIR3DS1	Q14943	382 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	C12orf45	Q8N5I9	185 aa	Predicted RBP	11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	PYGO2	Q9BRQ0	406 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	UQCC1	Q9NVA1	299 aa		11.73	□□□□□ -0.53
CLN3-231	ENST00000568422	NPIPB6	E9PJ23	425 aa		11.72	□□□□□ -0.53
CLN3-231	ENST00000568422		H3BTX0	84 aa		11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	PVALB	P20472	110 aa	Predicted RBP	11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	DAZ2	Q13117	558 aa	Known RBP	11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	VWC2	Q2TAL6	325 aa		11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	MRPL53	Q96EL3	112 aa	Known RBP	11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	PARD6G	Q9BYG4	376 aa	Predicted RBP	11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	WDR83OS	Q9Y284	106 aa		11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	LSM5	Q9Y4Y9	91 aa	Known RBP	11.72	□□□□□ -0.53
CLN3-231	ENST00000568422	GAGE12B	A1L429	117 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	C5orf51	A6NDU8	294 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	FAM25E	A8MYX2	175 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	CCS	O14618	274 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	LYRM1	O43325	122 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	GAGE7	O76087	117 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	CST7	O76096	145 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	GAGE12F	P0CL80	117 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	GAGE12G	P0CL81	117 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	GAGE12I	P0CL82	117 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	CT45A10	P0DMU9	189 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	BTF3	P20290	206 aa	Known RBP	11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	S100A11	P31949	105 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	RPL29	P47914	159 aa	Known RBP	11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	MIC13	Q5XKP0	118 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	ZNF431	Q8TF32	576 aa	Predicted RBP	11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	CHAC2	Q8WUX2	184 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	UPK3B	Q9BT76	320 aa		11.71	□□□□□ -0.53
CLN3-231	ENST00000568422	TRAV12-3	A0A0B4J271	114 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422		A0A1W2PPQ1	181 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422	PLA2G10	O15496	165 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422	TCRB	P04435	133 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422	SLC25A5	P05141	298 aa	Known RBP	11.7	□□□□□ -0.54
CLN3-231	ENST00000568422	C2orf50	Q96LR7	162 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422		Q9H3A6	140 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422	C11orf1	Q9H5F2	150 aa		11.7	□□□□□ -0.54
CLN3-231	ENST00000568422	TRAV5	A0A0B4J249	113 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	FAM24A	A6NFZ4	105 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	HOXA5	P20719	270 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	SULT1A1	P50225	295 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	HBG1	P69891	147 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	HBG2	P69892	147 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	ZNF680	Q8NEM1	530 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	LYRM2	Q9NU23	88 aa	Predicted RBP	11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	SLC39A9	Q9NUM3	307 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	ZNF586	Q9NXT0	402 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	TMEM14C	Q9P0S9	112 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	PRELID1	Q9Y255	219 aa		11.69	□□□□□ -0.54
CLN3-231	ENST00000568422	TRBV19	A0A075B6N1	114 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422		A0A0J9YY99	117 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422		J3KRW8	73 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	MPDU1	O75352	247 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	BAX	Q07812	192 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	PDE6H	Q13956	83 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	ATP6V1F	Q16864	119 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	ESRG	Q1W209	222 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	STX12	Q86Y82	276 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	LINC00477	Q96M19	166 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	C18orf15	Q96N68	181 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	LINC00467	Q9BRT7	94 aa		11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	MRPS16	Q9Y3D3	137 aa	Known RBP	11.68	□□□□□ -0.54
CLN3-231	ENST00000568422	TRAV6	A0A075B6T7	132 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	UBE2L5P	A0A1B0GUS4	154 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	C7orf71	A4D174	169 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	HIST1H1E	P10412	219 aa	Known RBP	11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	KRTAP4-5	Q9BYR2	181 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	TMPRSS5	Q9H3S3	457 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	NUDT15	Q9NV35	164 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	PTTG2	Q9NZH5	202 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	TIMM9	Q9Y5J7	89 aa		11.67	□□□□□ -0.54
CLN3-231	ENST00000568422	HSPG2	P98160	4391 aa		11.67	□□□□□ -0.54

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