RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 H3BQ15 152 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 TCRBP04435 133 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 CAMLGP49069 296 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 BCAP31P51572 246 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 RAB31Q13636 194 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 NRARPQ7Z6K4 114 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 OR10J6PQ8NGY7 276 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 ZNRF2Q8NHG8 242 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 PARD6GQ9BYG4 376 aaPredicted RBP11.25□□□□□ -0.61
CLN3-229ENST00000567963 PXMP4Q9Y6I8 212 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 TRAV6A0A075B6T7 132 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 CST7O76096 145 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 CAV2P51636 162 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 C11orf1Q9H5F2 150 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 C5orf51A6NDU8 294 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 FAM24AA6NFZ4 105 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 CCL18P55774 89 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 RGS21Q2M5E4 152 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 GFI1BQ5VTD9 330 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 MIC13Q5XKP0 118 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 ZNF431Q8TF32 576 aaPredicted RBP11.24□□□□□ -0.61
CLN3-229ENST00000567963 RNF141Q8WVD5 230 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 SEC22CQ9BRL7 303 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 WDR83OSQ9Y284 106 aa11.24□□□□□ -0.61
CLN3-229ENST00000567963 MUC4Q99102 2169 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 TRAV5A0A0B4J249 113 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 NBDYA0A0U1RRE5 68 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 FAM240BA0A1B0GVZ2 78 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 GUK1Q16774 197 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 VWC2Q2TAL6 325 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 OR1L4Q8NGR5 311 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 ENKURQ8TC29 256 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 C2orf50Q96LR7 162 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 NUDT15Q9NV35 164 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 UQCC1Q9NVA1 299 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 LINC00588Q9Y4M8 146 aa11.23□□□□□ -0.61
CLN3-229ENST00000567963 CT45A10P0DMU9 189 aa11.22□□□□□ -0.61
CLN3-229ENST00000567963 RPL29P47914 159 aaKnown RBP11.22□□□□□ -0.61
CLN3-229ENST00000567963 ZNF575Q86XF7 245 aa11.22□□□□□ -0.61
CLN3-229ENST00000567963 CCDC28AQ8IWP9 274 aa11.22□□□□□ -0.61
CLN3-229ENST00000567963 C12orf45Q8N5I9 185 aaPredicted RBP11.22□□□□□ -0.61
CLN3-229ENST00000567963 LINC00612Q8N6U2 182 aa11.22□□□□□ -0.61
CLN3-229ENST00000567963 PFDN5Q99471 154 aa11.22□□□□□ -0.61
CLN3-229ENST00000567963 PVALBP20472 110 aaPredicted RBP11.21□□□□□ -0.61
CLN3-229ENST00000567963 S100A11P31949 105 aa11.21□□□□□ -0.61
CLN3-229ENST00000567963 OR5I1Q13606 314 aa11.21□□□□□ -0.61
CLN3-229ENST00000567963 ODF3Q96PU9 254 aa11.21□□□□□ -0.61
CLN3-229ENST00000567963 LYRM2Q9NU23 88 aaPredicted RBP11.21□□□□□ -0.61
CLN3-229ENST00000567963 ZNF586Q9NXT0 402 aa11.21□□□□□ -0.61
CLN3-229ENST00000567963 NPIPB6E9PJ23 425 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 J3KRW8 73 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 ZNF253O75346 499 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 SULT1A1P50225 295 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 TNP2Q05952 138 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 IL15RAQ13261 267 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 CLINT1Q14677 625 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 SSX7Q7RTT5 188 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 C6orf223Q8N319 242 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 TMEM252Q8N6L7 170 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 CHAC2Q8WUX2 184 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 MARVELD1Q9BSK0 173 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 SLC39A9Q9NUM3 307 aa11.2□□□□□ -0.62
CLN3-229ENST00000567963 TRAV26-1A0A087WT03 109 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 TRAV12-3A0A0B4J271 114 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 LEPP41159 167 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 BAXQ07812 192 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 GNPNAT1Q96EK6 184 aaPredicted RBP11.19□□□□□ -0.62
CLN3-229ENST00000567963 TRBV19A0A075B6N1 114 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 UBE2L5PA0A1B0GUS4 154 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 IGSF23A1L1A6 192 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 GAGE12BA1L429 117 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 SNURFLB1AK76 121 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 GAGE7O76087 117 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 RLN2P04090 185 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 H2AFB2P0C5Z0 115 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 GAGE12FP0CL80 117 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 GAGE12GP0CL81 117 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 GAGE12IP0CL82 117 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 M6PRP20645 277 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 S100A10P60903 97 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 HBG1P69891 147 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 HBG2P69892 147 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 RAB32Q13637 225 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 ZNF503Q96F45 646 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 PYGO2Q9BRQ0 406 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 Q9H8V8 135 aa11.19□□□□□ -0.62
CLN3-229ENST00000567963 RYR1P21817 5038 aa11.18□□□□□ -0.62
CLN3-229ENST00000567963 HOXA5P20719 270 aa11.18□□□□□ -0.62
CLN3-229ENST00000567963 ATP6V1FQ16864 119 aa11.18□□□□□ -0.62
CLN3-229ENST00000567963 STX12Q86Y82 276 aa11.18□□□□□ -0.62
CLN3-229ENST00000567963 RXFP4Q8TDU9 374 aa11.18□□□□□ -0.62
CLN3-229ENST00000567963 MRPL53Q96EL3 112 aaKnown RBP11.18□□□□□ -0.62
CLN3-229ENST00000567963 TMEM14CQ9P0S9 112 aa11.18□□□□□ -0.62
CLN3-229ENST00000567963 A0A0J9YY99 117 aa11.17□□□□□ -0.62
CLN3-229ENST00000567963 M0R3E3 92 aa11.17□□□□□ -0.62
CLN3-229ENST00000567963 FGF7P21781 194 aa11.17□□□□□ -0.62
CLN3-229ENST00000567963 DAZ2Q13117 558 aaKnown RBP11.17□□□□□ -0.62
CLN3-229ENST00000567963 H3BNG1 76 aa11.16□□□□□ -0.62
CLN3-229ENST00000567963 NDUFB4O95168 129 aa11.16□□□□□ -0.62
CLN3-229ENST00000567963 SLC25A5P05141 298 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms