RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PRAC2D3DTV9 90 aa14.72□□□□□ -0.05
CLN3-219ENST00000565778 E5RGE8 158 aa14.72□□□□□ -0.05
CLN3-219ENST00000565778 MPDU1O75352 247 aa14.72□□□□□ -0.05
CLN3-219ENST00000565778 TSPOP30536 169 aa14.72□□□□□ -0.05
CLN3-219ENST00000565778 VPS13DQ5THJ4 4388 aa14.72□□□□□ -0.05
CLN3-219ENST00000565778 LYRM9A8MSI8 78 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 DEFB130BP0DP73 79 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 DEFB130AP0DP74 79 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 TAS2R60P59551 318 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 OR5C1Q8NGR4 320 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 ZNF586Q9NXT0 402 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 OR5AC2Q9NZP5 309 aa14.71□□□□□ -0.05
CLN3-219ENST00000565778 DEFA1P59665 94 aa14.7□□□□□ -0.06
CLN3-219ENST00000565778 DEFA3P59666 94 aa14.7□□□□□ -0.06
CLN3-219ENST00000565778 FCN2Q15485 313 aa14.7□□□□□ -0.06
CLN3-219ENST00000565778 THAP6Q8TBB0 222 aa14.7□□□□□ -0.06
CLN3-219ENST00000565778 MARVELD1Q9BSK0 173 aa14.7□□□□□ -0.06
CLN3-219ENST00000565778 NPCDR1Q9BY65 106 aa14.7□□□□□ -0.06
CLN3-219ENST00000565778 PARD6GQ9BYG4 376 aaPredicted RBP14.69□□□□□ -0.06
CLN3-219ENST00000565778 TIMM9Q9Y5J7 89 aa14.69□□□□□ -0.06
CLN3-219ENST00000565778 H0YIZ8 118 aa14.68□□□□□ -0.06
CLN3-219ENST00000565778 HIST1H1EP10412 219 aaKnown RBP14.68□□□□□ -0.06
CLN3-219ENST00000565778 CLINT1Q14677 625 aa14.68□□□□□ -0.06
CLN3-219ENST00000565778 KIR3DS1Q14943 382 aa14.68□□□□□ -0.06
CLN3-219ENST00000565778 TMEM88Q6PEY1 159 aa14.68□□□□□ -0.06
CLN3-219ENST00000565778 UBE2DNLQ8IWF7 75 aa14.68□□□□□ -0.06
CLN3-219ENST00000565778 TMEM14CQ9P0S9 112 aa14.68□□□□□ -0.06
CLN3-219ENST00000565778 TRBV19A0A075B6N1 114 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 H7BYZ3 331 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 J3KRW8 73 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 SSNA1O43805 119 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 ZNF253O75346 499 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 GCSAMLQ5JQS6 135 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 C16orf74Q96GX8 76 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 C20orf144Q9BQM9 153 aa14.67□□□□□ -0.06
CLN3-219ENST00000565778 TIMM8BQ9Y5J9 83 aaPredicted RBP14.67□□□□□ -0.06
CLN3-219ENST00000565778 PLAC8L1A1L4L8 177 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 CT45A10P0DMU9 189 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 PYYP10082 97 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 H2BFSP57053 126 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 ZNF493Q6ZR52 646 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 CCDC28AQ8IWP9 274 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 BLNKQ8WV28 456 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 PPP1R1CQ8WVI7 109 aa14.66□□□□□ -0.06
CLN3-219ENST00000565778 F5H768 121 aa14.65□□□□□ -0.06
CLN3-219ENST00000565778 M0R2N4 97 aa14.65□□□□□ -0.06
CLN3-219ENST00000565778 LEPP41159 167 aa14.65□□□□□ -0.06
CLN3-219ENST00000565778 BATF3Q9NR55 127 aa14.65□□□□□ -0.06
CLN3-219ENST00000565778 PRELID1Q9Y255 219 aa14.65□□□□□ -0.06
CLN3-219ENST00000565778 FRAS1Q86XX4 4008 aa14.64□□□□□ -0.07
CLN3-219ENST00000565778 CBY3A6NI87 242 aa14.64□□□□□ -0.07
CLN3-219ENST00000565778 NPIPB6E9PJ23 425 aa14.64□□□□□ -0.07
CLN3-219ENST00000565778 M0R3E3 92 aa14.64□□□□□ -0.07
CLN3-219ENST00000565778 GFI1BQ5VTD9 330 aa14.64□□□□□ -0.07
CLN3-219ENST00000565778 MRPL53Q96EL3 112 aaKnown RBP14.64□□□□□ -0.07
CLN3-219ENST00000565778 WDR61Q9GZS3 305 aaKnown RBP14.64□□□□□ -0.07
CLN3-219ENST00000565778 NOP10Q9NPE3 64 aaKnown RBP14.64□□□□□ -0.07
CLN3-219ENST00000565778 TRAV12-3A0A0B4J271 114 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 C17orf112F2Z3M2 114 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 NDUFB4O95168 129 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 ATP5G1P05496 136 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 ATP5G3P48201 142 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 ERCC8Q13216 396 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 PDE6HQ13956 83 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 MIR17HGQ75NE6 70 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 C15orf53Q8NAA6 179 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 TMEM263Q8WUH6 116 aaKnown RBP14.63□□□□□ -0.07
CLN3-219ENST00000565778 SLC25A2Q9BXI2 301 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 AAMDCQ9H7C9 122 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 KCNIP2Q9NS61 270 aa14.63□□□□□ -0.07
CLN3-219ENST00000565778 MPC2O95563 127 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 PET100P0DJ07 73 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 RNF212Q495C1 297 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 EXOC3-AS1Q8N2X6 119 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 RNASE8Q8TDE3 154 aaKnown RBP14.62□□□□□ -0.07
CLN3-219ENST00000565778 LINC00477Q96M19 166 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 ODF3Q96PU9 254 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 OR51M1Q9H341 326 aa14.62□□□□□ -0.07
CLN3-219ENST00000565778 NBEAP1P0C6P0 100 aa14.61□□□□□ -0.07
CLN3-219ENST00000565778 ICAM4Q14773 271 aa14.61□□□□□ -0.07
CLN3-219ENST00000565778 FAM167A-AS1Q96KT0 104 aa14.61□□□□□ -0.07
CLN3-219ENST00000565778 ATP5SQ99766 215 aa14.61□□□□□ -0.07
CLN3-219ENST00000565778 DNAH10Q8IVF4 4471 aa14.6□□□□□ -0.07
CLN3-219ENST00000565778 DNAH6Q9C0G6 4158 aa14.6□□□□□ -0.07
CLN3-219ENST00000565778 IGLV2-18A0A075B6J9 118 aa14.6□□□□□ -0.07
CLN3-219ENST00000565778 RPL12P30050 165 aaKnown RBP14.6□□□□□ -0.07
CLN3-219ENST00000565778 SCGB1C1Q8TD33 95 aa14.6□□□□□ -0.07
CLN3-219ENST00000565778 NUDT3O95989 172 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 SLC25A5P05141 298 aaKnown RBP14.59□□□□□ -0.07
CLN3-219ENST00000565778 LGALS9BQ3B8N2 356 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 FAM122CQ6P4D5 195 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 LINC00336Q6ZUF6 198 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 ATG101Q9BSB4 218 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 PAXXQ9BUH6 204 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 MRPL32Q9BYC8 188 aaKnown RBP14.59□□□□□ -0.07
CLN3-219ENST00000565778 AGPAT4-IT1Q9H0P7 198 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 HSPB11Q9Y547 144 aa14.59□□□□□ -0.07
CLN3-219ENST00000565778 SNURFLB1AK76 121 aa14.58□□□□□ -0.08
CLN3-219ENST00000565778 IFNA5P01569 189 aa14.58□□□□□ -0.08
CLN3-219ENST00000565778 OR10J4P0C629 311 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms