RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SHANK2-AS3Q9BTD1 123 aa10.59□□□□□ -0.71
CLK3-215ENST00000564353 FAM120AOSQ5T036 256 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 VMO1Q7Z5L0 202 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 TMEM75Q8N9X5 138 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 IGHV3OR16-10A0A075B7F0 116 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 TMEM213A2RRL7 107 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 OR4C46A6NHA9 309 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 LEPROTL1O95214 131 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 PLP1P60201 277 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 FANCD2OSQ96PS1 177 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 RAB1BQ9H0U4 201 aa10.58□□□□□ -0.72
CLK3-215ENST00000564353 TRAV30A0A087WSZ9 112 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 KLF5Q13887 457 aaPredicted RBP10.57□□□□□ -0.72
CLK3-215ENST00000564353 SAMD13Q5VXD3 122 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 TMEM70Q9BUB7 260 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 SELENOKQ9Y6D0 94 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 SPG11Q96JI7 2443 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 H3BRN7 92 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 TSPOP30536 169 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 ECSCRQ19T08 205 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 C5orf64Q2M2E5 130 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 RASL11AQ6T310 242 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 ZNF414Q96IQ9 312 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.57□□□□□ -0.72
CLK3-215ENST00000564353 ZNF207O43670 478 aaKnown RBP10.57□□□□□ -0.72
CLK3-215ENST00000564353 ATP5L2Q7Z4Y8 100 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 TIMD4Q96H15 378 aa10.57□□□□□ -0.72
CLK3-215ENST00000564353 CELSR2Q9HCU4 2923 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 HIVEP3Q5T1R4 2406 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 SMKR1H3BMG3 65 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 LOXL1Q08397 574 aaPredicted RBP10.56□□□□□ -0.72
CLK3-215ENST00000564353 LY6DQ14210 128 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 CRYBG3Q68DQ2 2970 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 WFDC3Q8IUB2 231 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 ARPC1AQ92747 370 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 LINC00527Q9UJ94 153 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 TRAV9-2A0A087WT02 112 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 PSG3Q16557 428 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 SHISA2Q6UWI4 295 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 ZNF48Q96MX3 618 aaPredicted RBP10.56□□□□□ -0.72
CLK3-215ENST00000564353 C1RLQ9NZP8 487 aa10.56□□□□□ -0.72
CLK3-215ENST00000564353 A0A1B0GUT8 65 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 NPIPB5A8MRT5 1133 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 F8W735 103 aaPredicted RBP10.55□□□□□ -0.72
CLK3-215ENST00000564353 APOHP02749 345 aaPredicted RBP10.55□□□□□ -0.72
CLK3-215ENST00000564353 PPIFP30405 207 aaKnown RBP10.55□□□□□ -0.72
CLK3-215ENST00000564353 CEACAM3P40198 252 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 ZNF492Q9P255 531 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 LINC01548A6NM66 108 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 FOXE3Q13461 319 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 LY6G5BQ8NDX9 201 aa10.55□□□□□ -0.72
CLK3-215ENST00000564353 CUBNO60494 3623 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 TRAV26-1A0A087WT03 109 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 SYS1-DBNDD2H3BUS1 97 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 GPR183P32249 361 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 LYZL1Q6UWQ5 148 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 AMN1Q8IY45 258 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 RNF182Q8N6D2 247 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 VGLL1Q99990 258 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 C21orf62Q9NYP8 219 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 TMEM14CQ9P0S9 112 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 OVOL3O00110 214 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 NCR2O95944 276 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 CRYBA4P53673 196 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 OR1N2Q8NGR9 330 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 UBTD1Q9HAC8 227 aa10.54□□□□□ -0.72
CLK3-215ENST00000564353 IFI27P40305 119 aaPredicted RBP10.53□□□□□ -0.72
CLK3-215ENST00000564353 ERCC8Q13216 396 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 KLHDC1Q8N7A1 406 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 AAMDCQ9H7C9 122 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 A0A1B0GV72 72 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 NPIPB6E9PJ23 425 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 G3V318 75 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 MRPS12O15235 138 aaKnown RBP10.53□□□□□ -0.72
CLK3-215ENST00000564353 CT45A10P0DMU9 189 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 ZNF80P51504 273 aaPredicted RBP10.53□□□□□ -0.72
CLK3-215ENST00000564353 MFAP4P55083 255 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 OR11H6Q8NGC7 330 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 PRSS3P2Q8NHM4 247 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 IGLV11-55A0A075B6I3 123 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 D6R8Y8 96 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 K7EQM0 130 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 OR8A1Q8NGG7 326 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 MSRB1Q9NZV6 116 aa10.53□□□□□ -0.72
CLK3-215ENST00000564353 GAGE12BA1L429 117 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 SH2D1AO60880 128 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 PRTN3P24158 256 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 UTP20O75691 2785 aaKnown RBP10.52□□□□□ -0.73
CLK3-215ENST00000564353 ODF1Q14990 250 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 MPV17L2Q567V2 206 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 CT83Q5H943 113 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 TMEM219Q86XT9 240 aa10.52□□□□□ -0.73
CLK3-215ENST00000564353 WI2-2373I1.2A0A1W2PRP0 233 aa10.51□□□□□ -0.73
CLK3-215ENST00000564353 PRAC2D3DTV9 90 aa10.51□□□□□ -0.73
CLK3-215ENST00000564353 HAX1O00165 279 aa10.51□□□□□ -0.73
CLK3-215ENST00000564353 GAS8-AS1O95177 125 aa10.51□□□□□ -0.73
CLK3-215ENST00000564353 HOXB4P17483 251 aaPredicted RBP10.51□□□□□ -0.73
CLK3-215ENST00000564353 ZNF562Q6V9R5 426 aa10.51□□□□□ -0.73
CLK3-215ENST00000564353 TMEM189A5PLL7 270 aa10.51□□□□□ -0.73
CLK3-215ENST00000564353 NDUFA3O95167 84 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms