RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ZGRF1Q86YA3 2104 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 CUL9Q8IWT3 2517 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 IGKV2-40A0A087WW87 121 aaPredicted RBP10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 C9orf118A6NHY6 69 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 H3BRM9 83 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 TIMM23O14925 209 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 MRPS12O15235 138 aaKnown RBP10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 IGKV2D-40P01614 121 aaPredicted RBP10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 IFI27L1Q96BM0 104 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 U3KQK5 164 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 DMXL2Q8TDJ6 3036 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 KALRNO60229 2985 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 KIR3DS1Q14943 382 aa10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 S100A7AQ86SG5 101 aa10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 MEGF9Q9H1U4 602 aa10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 ONECUT1Q9UBC0 465 aa10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 HSD52Q0P140 79 aa10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 OR9G4Q8NGQ1 327 aa10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 SRSF8Q9BRL6 282 aaKnown RBP10.97□□□□□ -0.65
VPS9D1-202ENST00000561976 LAMA5O15230 3695 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 WI2-2373I1.2A0A1W2PRP0 233 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 SHISA9B4DS77 424 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 SAP30O75446 220 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 NPYP01303 97 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 JMJD8Q96S16 334 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 RNF5Q99942 180 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 ZZEF1O43149 2961 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 ADGRG4Q8IZF6 3080 aa10.96□□□□□ -0.65
VPS9D1-202ENST00000561976 PDE6HQ13956 83 aa10.96□□□□□ -0.66
VPS9D1-202ENST00000561976 PRSS57Q6UWY2 283 aa10.96□□□□□ -0.66
VPS9D1-202ENST00000561976 IGFBPL1Q8WX77 278 aa10.96□□□□□ -0.66
VPS9D1-202ENST00000561976 RAB1BQ9H0U4 201 aa10.96□□□□□ -0.66
VPS9D1-202ENST00000561976 A0A0G2JLM5 398 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 GFRALQ6UXV0 394 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 PCP2Q8IVA1 136 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 FER1L6-AS1Q8NA97 138 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 C18orf15Q96N68 181 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 NBR2O15453 112 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 EGR2P11161 476 aaPredicted RBP10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 HES1Q14469 280 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 Q8TAT8 98 aa10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 COL25A1Q9BXS0 654 aaPredicted RBP10.95□□□□□ -0.66
VPS9D1-202ENST00000561976 NPIPB5A8MRT5 1133 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 NDUFS7O75251 213 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 UFSP1Q6NVU6 142 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 OR4X2Q8NGF9 303 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 MFAP4P55083 255 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 OR2K2Q8NGT1 345 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 PRR25Q96S07 402 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 CSTL1Q9H114 145 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 DKK2Q9UBU2 259 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 OTOGLQ3ZCN5 2332 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 TTC28Q96AY4 2481 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 IGHV3-23P01764 117 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 TM4SF20Q53R12 229 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 IGFL4Q6B9Z1 124 aa10.94□□□□□ -0.66
VPS9D1-202ENST00000561976 LY6LH3BQJ8 138 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 K7EP34 96 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 SIVA1O15304 175 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 RIPPLY3P57055 190 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 IGF2-ASQ6U949 168 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 ADAMTSL5Q6ZMM2 481 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 ORM1P02763 201 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 BMI1P35226 326 aa10.93□□□□□ -0.66
VPS9D1-202ENST00000561976 B9A039 149 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 RPL7P18124 248 aaKnown RBP10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 MAP1LC3AQ9H492 121 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 POLEQ07864 2286 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 ZNF318Q5VUA4 2279 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 TACC2O95359 2948 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 ZNF80P51504 273 aaPredicted RBP10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 PAX8Q06710 450 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 VGLL1Q99990 258 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 MSRB1Q9NZV6 116 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 JKAMPQ9P055 326 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 GVINP1Q7Z2Y8 2422 aa10.92□□□□□ -0.66
VPS9D1-202ENST00000561976 C21orf62Q9NYP8 219 aa10.91□□□□□ -0.66
VPS9D1-202ENST00000561976 DPM3Q9P2X0 92 aa10.91□□□□□ -0.66
VPS9D1-202ENST00000561976 SPCS1Q9Y6A9 102 aa10.91□□□□□ -0.66
VPS9D1-202ENST00000561976 CD3EP07766 207 aa10.91□□□□□ -0.66
VPS9D1-202ENST00000561976 FANCD2OSQ96PS1 177 aa10.91□□□□□ -0.66
VPS9D1-202ENST00000561976 PRSS1P07477 247 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 HLA-DMBP28068 263 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 LEPP41159 167 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 Q5PR19 223 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 DMXL1Q9Y485 3027 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 APC2O95996 2303 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 IGHV3OR16-8A0A075B7F1 116 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 A0A1W2PPM0 123 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 GCSHP23434 173 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 ABHD17AQ96GS6 310 aa10.9□□□□□ -0.66
VPS9D1-202ENST00000561976 IGLV11-55A0A075B6I3 123 aa10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 FBLL1A6NHQ2 334 aaKnown RBP10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 NCBP2LA6PVI3 153 aaKnown RBP10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 EVI2AP22794 236 aa10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 C5orf64Q2M2E5 130 aa10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 CLUHP3Q96NS8 147 aa10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 IGHV3-35A0A0C4DH35 117 aa10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 IGLC6P0CF74 106 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms