RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 C4BPBP20851 252 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 FGF8P55075 233 aaPredicted RBP15.97■□□□□ 0.15
SNX1-210ENST00000560260 PSG9Q00887 426 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 FAM213BQ8TBF2 198 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 SUN5Q8TC36 379 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 TM2D3Q9BRN9 247 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 MAP1LC3B2A6NCE7 125 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 A8MTW9 85 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 ICAM4Q14773 271 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 OR8A1Q8NGG7 326 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 MAP1LC3BQ9GZQ8 125 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 Q9H3A6 140 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 TMPRSS5Q9H3S3 457 aa15.96■□□□□ 0.15
SNX1-210ENST00000560260 KIR2DL5BA0A0G2JN68 375 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 KIR2DL5BA0A0G2JPC4 375 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 CXorf1O96002 111 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 CNN1P51911 297 aaKnown RBP15.95■□□□□ 0.14
SNX1-210ENST00000560260 APOC4P55056 127 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 RANP62826 216 aaKnown RBP15.95■□□□□ 0.14
SNX1-210ENST00000560260 EBLN2Q6P2I7 272 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 KIR2DL5AQ8N109 375 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 KIR2DL5BQ8NHK3 375 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 MRPL53Q96EL3 112 aaKnown RBP15.95■□□□□ 0.14
SNX1-210ENST00000560260 CLEC5AQ9NY25 188 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 TENM3Q9P273 2699 aa15.95■□□□□ 0.14
SNX1-210ENST00000560260 HIST1H1AQ02539 215 aaPredicted RBP15.94■□□□□ 0.14
SNX1-210ENST00000560260 FAM74A1Q5RGS3 127 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 AMTNQ6UX39 209 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 OR4B1Q8NGF8 309 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 CSTL1Q9H114 145 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 SULT1A2P50226 295 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 CLUHP3Q96NS8 147 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 AAMDCQ9H7C9 122 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 PRELID1Q9Y255 219 aa15.94■□□□□ 0.14
SNX1-210ENST00000560260 TGP01266 2768 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 CA1P00915 261 aaPredicted RBP15.93■□□□□ 0.14
SNX1-210ENST00000560260 FXYD7P58549 80 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 DEFB135Q30KP9 77 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 EIF5AL1Q6IS14 154 aaKnown RBP15.93■□□□□ 0.14
SNX1-210ENST00000560260 DPPA3Q6W0C5 159 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 IQCF2Q8IXL9 164 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 LYPD1Q8N2G4 141 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 MBD3L1Q8WWY6 194 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 SLC35B3Q9H1N7 401 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 OTORQ9NRC9 128 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 TMEM167BQ9NRX6 74 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 NBEAL2Q6ZNJ1 2754 aa15.93■□□□□ 0.14
SNX1-210ENST00000560260 DUSP14O95147 198 aaKnown RBP15.92■□□□□ 0.14
SNX1-210ENST00000560260 MORN3Q6PF18 240 aaPredicted RBP15.92■□□□□ 0.14
SNX1-210ENST00000560260 IGKV2-40A0A087WW87 121 aaPredicted RBP15.91■□□□□ 0.14
SNX1-210ENST00000560260 UBE2CO00762 179 aa15.91■□□□□ 0.14
SNX1-210ENST00000560260 IGKV2D-40P01614 121 aaPredicted RBP15.91■□□□□ 0.14
SNX1-210ENST00000560260 ALKAL2Q6UX46 152 aa15.91■□□□□ 0.14
SNX1-210ENST00000560260 SPATA25Q9BR10 227 aa15.91■□□□□ 0.14
SNX1-210ENST00000560260 A0A1B0GV50 99 aa15.9■□□□□ 0.14
SNX1-210ENST00000560260 PGPA6NDG6 321 aa15.9■□□□□ 0.14
SNX1-210ENST00000560260 GGTLC3B5MD39 225 aa15.9■□□□□ 0.14
SNX1-210ENST00000560260 NPIPB6E9PJ23 425 aa15.9■□□□□ 0.14
SNX1-210ENST00000560260 NHLRC4P0CG21 123 aaPredicted RBP15.9■□□□□ 0.14
SNX1-210ENST00000560260 SFT2D1Q8WV19 159 aa15.9■□□□□ 0.14
SNX1-210ENST00000560260 YTHDF2Q9Y5A9 579 aaKnown RBP15.9■□□□□ 0.14
SNX1-210ENST00000560260 RAB5CP51148 216 aa15.89■□□□□ 0.13
SNX1-210ENST00000560260 ERCC8Q13216 396 aa15.89■□□□□ 0.13
SNX1-210ENST00000560260 Q6ZWC4 215 aa15.89■□□□□ 0.13
SNX1-210ENST00000560260 OVOL2Q9BRP0 275 aa15.89■□□□□ 0.13
SNX1-210ENST00000560260 H2AFB1P0C5Y9 115 aa15.88■□□□□ 0.13
SNX1-210ENST00000560260 UBE2G2P60604 165 aa15.88■□□□□ 0.13
SNX1-210ENST00000560260 GNG5P63218 68 aa15.88■□□□□ 0.13
SNX1-210ENST00000560260 CSNK1G2-AS1Q8NCQ2 148 aa15.88■□□□□ 0.13
SNX1-210ENST00000560260 OR10J6PQ8NGY7 276 aa15.88■□□□□ 0.13
SNX1-210ENST00000560260 XCL2Q9UBD3 114 aa15.88■□□□□ 0.13
SNX1-210ENST00000560260 M0R2Z0 102 aa15.87■□□□□ 0.13
SNX1-210ENST00000560260 RNF183Q96D59 192 aa15.87■□□□□ 0.13
SNX1-210ENST00000560260 RCHY1Q96PM5 261 aa15.87■□□□□ 0.13
SNX1-210ENST00000560260 VGLL1Q99990 258 aa15.87■□□□□ 0.13
SNX1-210ENST00000560260 A0A1W2PRE2 83 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 FAM74A7A6NL05 159 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 DIRC3C9JPN6 131 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 CT45A10P0DMU9 189 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 CCL20P78556 96 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 SPINK13Q1W4C9 94 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 AGPAT4-IT1Q9H0P7 198 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 ZMAT4Q9H898 229 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 RPH3ALQ9UNE2 315 aa15.86■□□□□ 0.13
SNX1-210ENST00000560260 CRXO43186 299 aaPredicted RBP15.85■□□□□ 0.13
SNX1-210ENST00000560260 NUTF2P61970 127 aaKnown RBP15.85■□□□□ 0.13
SNX1-210ENST00000560260 TP53TG1Q9Y2A0 90 aa15.85■□□□□ 0.13
SNX1-210ENST00000560260 SPRY2O43597 315 aa15.84■□□□□ 0.13
SNX1-210ENST00000560260 SLC25A5P05141 298 aaKnown RBP15.84■□□□□ 0.13
SNX1-210ENST00000560260 CSN1S1P47710 185 aa15.84■□□□□ 0.13
SNX1-210ENST00000560260 SUMO1P63165 101 aaKnown RBP15.84■□□□□ 0.13
SNX1-210ENST00000560260 KIR3DS1Q14943 382 aa15.84■□□□□ 0.13
SNX1-210ENST00000560260 C9orf47Q6ZRZ4 202 aa15.84■□□□□ 0.13
SNX1-210ENST00000560260 RXFP4Q8TDU9 374 aa15.84■□□□□ 0.13
SNX1-210ENST00000560260 TRAV1-1A0A0B4J248 108 aa15.83■□□□□ 0.12
SNX1-210ENST00000560260 C5orf17Q8NAS9 161 aa15.83■□□□□ 0.12
SNX1-210ENST00000560260 Q8TAT8 98 aa15.83■□□□□ 0.12
SNX1-210ENST00000560260 CMTM2Q8TAZ6 248 aa15.83■□□□□ 0.12
SNX1-210ENST00000560260 FAM19A4Q96LR4 140 aa15.83■□□□□ 0.12
SNX1-210ENST00000560260 U3KQK5 164 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 262.5 ms