RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 M0R3E3 92 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 PYYP10082 97 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 TSPOP30536 169 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 CDKN1BP46527 198 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 ERCC8Q13216 396 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 UBE2DNLQ8IWF7 75 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 GPN1Q9HCN4 374 aaPredicted RBP12.46□□□□□ -0.41
HDDC3-205ENST00000559898 LYRM9A8MSI8 78 aa12.45□□□□□ -0.42
HDDC3-205ENST00000559898 NDUFB4O95168 129 aa12.45□□□□□ -0.42
HDDC3-205ENST00000559898 RPL29P47914 159 aaKnown RBP12.45□□□□□ -0.42
HDDC3-205ENST00000559898 MZT2BQ6NZ67 158 aa12.45□□□□□ -0.42
HDDC3-205ENST00000559898 Q6ZR54 194 aa12.45□□□□□ -0.42
HDDC3-205ENST00000559898 Q6ZRG5 221 aa12.45□□□□□ -0.42
HDDC3-205ENST00000559898 THAP6Q8TBB0 222 aa12.45□□□□□ -0.42
HDDC3-205ENST00000559898 RNASE8Q8TDE3 154 aaKnown RBP12.45□□□□□ -0.42
HDDC3-205ENST00000559898 F5H768 121 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 UPK1BO75841 260 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 PVALBP20472 110 aaPredicted RBP12.44□□□□□ -0.42
HDDC3-205ENST00000559898 S100A11P31949 105 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 TAS2R60P59551 318 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 LRRC37A5PQ49AS3 106 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 S100ZQ8WXG8 99 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 FAM210BQ96KR6 192 aa12.44□□□□□ -0.42
HDDC3-205ENST00000559898 NOP10Q9NPE3 64 aaKnown RBP12.44□□□□□ -0.42
HDDC3-205ENST00000559898 RAB31Q13636 194 aa12.43□□□□□ -0.42
HDDC3-205ENST00000559898 S100A7AQ86SG5 101 aa12.43□□□□□ -0.42
HDDC3-205ENST00000559898 OR1L4Q8NGR5 311 aa12.43□□□□□ -0.42
HDDC3-205ENST00000559898 NPCDR1Q9BY65 106 aa12.43□□□□□ -0.42
HDDC3-205ENST00000559898 TRBV19A0A075B6N1 114 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 NPIPB6E9PJ23 425 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 LGALS9BQ3B8N2 356 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 Q6ZQT7 251 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 LINC00299Q6ZSB3 139 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 MIR17HGQ75NE6 70 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 STX12Q86Y82 276 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 TMEM256Q8N2U0 113 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 EXOC3-AS1Q8N2X6 119 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 OR5C1Q8NGR4 320 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 OR10J6PQ8NGY7 276 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 ENKURQ8TC29 256 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 CHAC2Q8WUX2 184 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 C16orf74Q96GX8 76 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 SLC25A2Q9BXI2 301 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 DNAH11Q96DT5 4516 aa12.42□□□□□ -0.42
HDDC3-205ENST00000559898 TRAV12-3A0A0B4J271 114 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 PRSS29PA6NIE9 313 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 H2BFSP57053 126 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 CLINT1Q14677 625 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 BLNKQ8WV28 456 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 FAM167A-AS1Q96KT0 104 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 PFDN5Q99471 154 aa12.41□□□□□ -0.42
HDDC3-205ENST00000559898 EIF3GO75821 320 aaKnown RBP eCLIP12.4□□□□□ -0.42
HDDC3-205ENST00000559898 NUDT3O95989 172 aa12.4□□□□□ -0.42
HDDC3-205ENST00000559898 HBG1P69891 147 aa12.4□□□□□ -0.42
HDDC3-205ENST00000559898 HBG2P69892 147 aa12.4□□□□□ -0.42
HDDC3-205ENST00000559898 TMEM263Q8WUH6 116 aaKnown RBP12.4□□□□□ -0.42
HDDC3-205ENST00000559898 RNF141Q8WVD5 230 aa12.4□□□□□ -0.42
HDDC3-205ENST00000559898 RNF24Q9Y225 148 aa12.4□□□□□ -0.42
HDDC3-205ENST00000559898 TIMM8BQ9Y5J9 83 aaPredicted RBP12.4□□□□□ -0.42
HDDC3-205ENST00000559898 CBY3A6NI87 242 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 INMT-MINDY4F8WBC2 141 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 H7BYZ3 331 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 CD300CQ08708 224 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 ATP6V1FQ16864 119 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 RNF212Q495C1 297 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 PRR9Q5T870 116 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 LINC00336Q6ZUF6 198 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 NMES1Q9C002 83 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 AGPAT4-IT1Q9H0P7 198 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 TMEM14CQ9P0S9 112 aa12.39□□□□□ -0.43
HDDC3-205ENST00000559898 IGKV2-40A0A087WW87 121 aaPredicted RBP12.38□□□□□ -0.43
HDDC3-205ENST00000559898 IGKV2D-40P01614 121 aaPredicted RBP12.38□□□□□ -0.43
HDDC3-205ENST00000559898 ATP5G1P05496 136 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 HIST1H1EP10412 219 aaKnown RBP12.38□□□□□ -0.43
HDDC3-205ENST00000559898 HOXA5P20719 270 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 ATP5G3P48201 142 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 BTN1A1Q13410 526 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 GUK1Q16774 197 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 LINC00612Q8N6U2 182 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 FAM19A4Q96LR4 140 aa12.38□□□□□ -0.43
HDDC3-205ENST00000559898 GAGE12BA1L429 117 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 GAGE7O76087 117 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 GAGE12FP0CL80 117 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 GAGE12GP0CL81 117 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 GAGE12IP0CL82 117 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 C15orf53Q8NAA6 179 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 ZNF503Q96F45 646 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 VGLL1Q99990 258 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 PTTG2Q9NZH5 202 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 LINC00588Q9Y4M8 146 aa12.37□□□□□ -0.43
HDDC3-205ENST00000559898 A0A0J9YY99 117 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 E5RGE8 158 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 ZNF253O75346 499 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 OR10J4P0C629 311 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 LEPP41159 167 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 ICAM4Q14773 271 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 FAM122CQ6P4D5 195 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 ZNF493Q6ZR52 646 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 ZNRF2Q8NHG8 242 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 PPP1R1CQ8WVI7 109 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms