RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 KPNA4O00629 521 aaPredicted RBP0.46□□□□□ -2.34
USP3-209ENST00000558925 IFNA4P05014 189 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 CXCL8P10145 99 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 BCL2P10415 239 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 RPS3P23396 243 aaKnown RBP eCLIP0.46□□□□□ -2.34
USP3-209ENST00000558925 GDF5OSQ5U4N7 250 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 C2orf82Q6UX34 121 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 LINC00305Q7Z4B0 112 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 ARPINQ7Z6K5 226 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 GKN2Q86XP6 184 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 LRRC18Q8N456 261 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 CCDC115Q96NT0 180 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 FKBP11Q9NYL4 201 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 ORMDL1Q9P0S3 153 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 MED31Q9Y3C7 131 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 CITO14578 2027 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 COL24A1Q17RW2 1714 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 MYLKQ15746 1914 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 FER1L6Q2WGJ9 1857 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 RFX7Q2KHR2 1363 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 USP24Q9UPU5 2620 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 TRAV27A0A087WT01 109 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 GNG14A0A1W2PPG7 69 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 E7EQ34 232 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 M0QZK8 103 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 LYRM1O43325 122 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 NUPR1O60356 82 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 NBEAP1P0C6P0 100 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 IL9P15248 144 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 S100GP29377 79 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 SDC2P34741 201 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 POLR2HP52434 150 aaKnown RBP0.45□□□□□ -2.34
USP3-209ENST00000558925 FOXA3P55318 350 aaPredicted RBP0.45□□□□□ -2.34
USP3-209ENST00000558925 TFAMQ00059 246 aaKnown RBP0.45□□□□□ -2.34
USP3-209ENST00000558925 PSG9Q00887 426 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 DR1Q01658 176 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 MIR22HGQ0VDD5 57 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 DIAPH2-AS1Q14236 149 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 VMA21Q3ZAQ7 101 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 SAMD13Q5VXD3 122 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 FOXI2Q6ZQN5 318 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 TEN1Q86WV5 123 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 LINC00269Q8N2A0 174 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 OR5H6Q8NGV6 325 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 C4orf3Q8WVX3 66 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 PSMF1Q92530 271 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 DIRC1Q969H9 104 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 ISOC1Q96CN7 298 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 DDA1Q9BW61 102 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 TMEM138Q9NPI0 162 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 TMEM14CQ9P0S9 112 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 LAMTOR3Q9UHA4 124 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 CAMSAP2Q08AD1 1489 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 CECR2Q9BXF3 1484 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 XIRP1Q702N8 1843 aaKnown RBP0.45□□□□□ -2.34
USP3-209ENST00000558925 ADGRB2O60241 1585 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 RTL9Q8NET4 1388 aa0.45□□□□□ -2.34
USP3-209ENST00000558925 TRPM7Q96QT4 1865 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 E9PCH4 1651 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 LOC107984640A0A0U1RRK4 108 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 PRORSD1PA6NEY8 169 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 H3BMG7 143 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 H3BRM9 83 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 FABP4P15090 132 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 COX7CP15954 63 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 CIRBPQ14011 172 aaKnown RBP0.44□□□□□ -2.34
USP3-209ENST00000558925 LINC00322Q6ZN03 302 aaPredicted RBP0.44□□□□□ -2.34
USP3-209ENST00000558925 ZCCHC23Q6ZST2 131 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 TAC4Q86UU9 113 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 OR5AS1Q8N127 324 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 TMEM35BQ8NCS4 154 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 CCL4L1Q8NHW4 92 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 CLEC2BQ92478 149 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 LINC00526Q96FQ7 95 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 PRELID3AQ96N28 172 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 OR4C12Q96R67 309 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 NABP2Q9BQ15 211 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 MRPL57Q9BQC6 102 aaKnown RBP0.44□□□□□ -2.34
USP3-209ENST00000558925 LIMD2Q9BT23 127 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 WFDC10AQ9H1F0 79 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 TCEAL2Q9H3H9 227 aaPredicted RBP0.44□□□□□ -2.34
USP3-209ENST00000558925 CBLN4Q9NTU7 201 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 LAMTOR2Q9Y2Q5 125 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 TPRKBQ9Y3C4 175 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 TRPM1Q7Z4N2 1603 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 BCL9O00512 1426 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 TRAPPC8Q9Y2L5 1435 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 PTPRDP23468 1912 aa0.44□□□□□ -2.34
USP3-209ENST00000558925 ADGBQ8N7X0 1667 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TRANK1O15050 2925 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 PHRF1Q9P1Y6 1649 aaKnown RBP0.43□□□□□ -2.34
USP3-209ENST00000558925 CHD8Q9HCK8 2581 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TRAV23DV6A0A075B6W5 121 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TRAV13-1A0A0B4J241 112 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 LOC107984156A0A0G2JMH3 177 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TRBV27A0A0K0K1C4 114 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 C3orf85A0A1B0GTC6 90 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 C5orf58C9J3I9 102 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TSTD3H0UI37 97 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 PFDN1O60925 122 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms