RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 UNC13CQ8NB66 2214 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 ZNF785A8K8V0 405 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 MALP21145 153 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 CRIP2P52943 208 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-226ENST00000556825 PRDM14Q9GZV8 571 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 ESPL1Q14674 2120 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 LRP4O75096 1905 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 TEX49A0A1B0GTD5 131 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 FAM240AA0A1B0GVK7 77 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 ATP5G1P05496 136 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 DTX2Q86UW9 622 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 VKORC1L1Q8N0U8 176 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 LINC00477Q96M19 166 aa10.88□□□□□ -0.67
SHMT2-226ENST00000556825 CUL9Q8IWT3 2517 aa10.87□□□□□ -0.67
SHMT2-226ENST00000556825 CDX4O14627 284 aaPredicted RBP10.87□□□□□ -0.67
SHMT2-226ENST00000556825 COX7A2P2O60397 106 aa10.87□□□□□ -0.67
SHMT2-226ENST00000556825 FOXF2Q12947 444 aa10.87□□□□□ -0.67
SHMT2-226ENST00000556825 C10orf113Q5VZT2 155 aa10.87□□□□□ -0.67
SHMT2-226ENST00000556825 C16orf47Q6ZP98 133 aaPredicted RBP10.87□□□□□ -0.67
SHMT2-226ENST00000556825 ZNF407Q9C0G0 2248 aa10.87□□□□□ -0.67
SHMT2-226ENST00000556825 EML6Q6ZMW3 1958 aa10.87□□□□□ -0.67
SHMT2-226ENST00000556825 TINCRA0A1B0GVN0 87 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 C12orf77C9JDV5 145 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 TCRAP04437 139 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 COX7CP15954 63 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 SIGLEC15Q6ZMC9 328 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 USP34Q70CQ2 3546 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 C15orf61A6NNL5 157 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 OVOL1O14753 267 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 PLNP26678 52 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 FKBP2P26885 142 aaKnown RBP10.86□□□□□ -0.67
SHMT2-226ENST00000556825 CKS2P33552 79 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 CEMP1Q6PRD7 247 aaPredicted RBP10.86□□□□□ -0.67
SHMT2-226ENST00000556825 Q86TA4 180 aa10.86□□□□□ -0.67
SHMT2-226ENST00000556825 CACNA1DQ01668 2161 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 H3BMM0 161 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 MRPS12O15235 138 aaKnown RBP10.85□□□□□ -0.67
SHMT2-226ENST00000556825 FSTL3O95633 263 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 NGFP01138 241 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 HES3Q5TGS1 186 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 Q6ZS52 159 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 RNF138Q8WVD3 245 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 UBE2WQ96B02 151 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 RTL8AQ9BWD3 113 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 KNL1Q8NG31 2342 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 IGLV3-32A0A0A0MS00 114 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 PCBD1P61457 104 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 PROK2Q9HC23 129 aa10.85□□□□□ -0.67
SHMT2-226ENST00000556825 FOXA2Q9Y261 457 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-226ENST00000556825 RS1O15537 224 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 IGLV3-19P01714 112 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 IGHV4-34P06331 123 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 CNTFRP26992 372 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 HLA-DMBP28068 263 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 PLGLB1Q02325 96 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 PATE2Q6UY27 113 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 OCIAD1Q9NX40 245 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 USF3Q68DE3 2245 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 OOEPA6NGQ2 149 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 C10orf142B7Z368 130 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 IL11RAQ14626 422 aa10.84□□□□□ -0.67
SHMT2-226ENST00000556825 IGHV3-15A0A0B4J1V0 119 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 TMEM30CPA0ZSE6 113 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 SMKR1H3BMG3 65 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 OXTP01178 125 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 TRACP01848 142 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 EDN2P20800 178 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 TMEM258P61165 79 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 JPT2Q9H910 190 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 TMEM14BQ9NUH8 114 aa10.83□□□□□ -0.68
SHMT2-226ENST00000556825 NDUFA3O95167 84 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 CFC1BP0CG36 223 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 CFC1P0CG37 223 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 ZNF134P52741 427 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 NXT2Q9NPJ8 142 aaKnown RBP10.82□□□□□ -0.68
SHMT2-226ENST00000556825 LINC00527Q9UJ94 153 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 TET2Q6N021 2002 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-226ENST00000556825 MLANAQ16655 118 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 MDP1Q86V88 176 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 C1orf43Q9BWL3 253 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 PRO1854Q9UHT4 67 aa10.82□□□□□ -0.68
SHMT2-226ENST00000556825 TRBV10-2A0A0K0K1G8 114 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 PROP1O75360 226 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 LINC01620Q4KN68 170 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 C2orf48Q96LS8 159 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 TRBV6-1A0A0K0K1D8 114 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 SPTY2D1-AS1A0A0U1RR47 76 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 INS-IGF2F8WCM5 200 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 P0DMU3 169 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 FAM231AP0DMU4 169 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 FAM231CP0DMU5 169 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 ATXN8Q156A1 80 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 PRNTQ86SH4 94 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 TMEM190Q8WZ59 177 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 UCN2Q96RP3 112 aa10.81□□□□□ -0.68
SHMT2-226ENST00000556825 A0A1W2PPC4 97 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 J3QT63 122 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 SPINK2P20155 84 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 CD69Q07108 199 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 C2orf83Q53S99 150 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms