RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 TMEM160Q9NX00 188 aa11.28□□□□□ -0.6
VPS33B-205ENST00000556096 PSG8Q9UQ74 426 aa11.28□□□□□ -0.6
VPS33B-205ENST00000556096 TRAV8-1A0A0A6YYK1 113 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 SMIM27A0A1W2PRY6 76 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 C5orf52A6NGY3 159 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 SRD5A1P18405 259 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 UNQ9165/PRO28630Q6UXU0 137 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 PRNTQ86SH4 94 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 MYOZ3Q8TDC0 251 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 GRAMD2BQ96HH9 432 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 SERTAD4Q9NUC0 356 aa11.27□□□□□ -0.61
VPS33B-205ENST00000556096 C19orf71A6NCJ1 209 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 CRLF1O75462 422 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 SNRPEP62304 92 aaKnown RBP11.26□□□□□ -0.61
VPS33B-205ENST00000556096 RNF152Q8N8N0 203 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 GLMPQ8WWB7 406 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 FRZBQ92765 325 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 SAV1Q9H4B6 383 aaPredicted RBP11.26□□□□□ -0.61
VPS33B-205ENST00000556096 C2CD3Q4AC94 2353 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 IGHV3-66A0A0C4DH42 116 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 A0A1W2PS18 150 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BKO60814 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BJP06899 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BOP23527 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BBP33778 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BDP58876 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BCP62807 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 RPL19P84098 196 aaKnown RBP11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST2H2BEQ16778 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 ACTL10Q5JWF8 245 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.26□□□□□ -0.61
VPS33B-205ENST00000556096 PRR27Q6MZM9 219 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 C10orf99Q6UWK7 81 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 GPHB5Q86YW7 130 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BHQ93079 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BNQ99877 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 HIST1H2BMQ99879 126 aa11.26□□□□□ -0.61
VPS33B-205ENST00000556096 NIPBLQ6KC79 2804 aaeCLIP11.26□□□□□ -0.61
VPS33B-205ENST00000556096 IGHV3OR16-13A0A075B7E8 117 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 IGHV3-74A0A0B4J1X5 117 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 K7EMT4 169 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 TRGC1P0CF51 173 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 FAM106AQ4KMX7 169 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 CT83Q5H943 113 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 CLEC5AQ9NY25 188 aa11.25□□□□□ -0.61
VPS33B-205ENST00000556096 IGHV3-49A0A0A0MS15 119 aa11.24□□□□□ -0.61
VPS33B-205ENST00000556096 UBE2CO00762 179 aa11.24□□□□□ -0.61
VPS33B-205ENST00000556096 CHEK1O14757 476 aa11.24□□□□□ -0.61
VPS33B-205ENST00000556096 RPLP1P05386 114 aaKnown RBP11.24□□□□□ -0.61
VPS33B-205ENST00000556096 SRSF2Q01130 221 aaKnown RBP11.24□□□□□ -0.61
VPS33B-205ENST00000556096 LCN12Q6JVE5 192 aa11.24□□□□□ -0.61
VPS33B-205ENST00000556096 LINC00322Q6ZN03 302 aaPredicted RBP11.24□□□□□ -0.61
VPS33B-205ENST00000556096 MRPL53Q96EL3 112 aaKnown RBP11.24□□□□□ -0.61
VPS33B-205ENST00000556096 DAZAP1Q96EP5 407 aaKnown RBP11.24□□□□□ -0.61
VPS33B-205ENST00000556096 DUX5Q96PT3 197 aa11.24□□□□□ -0.61
VPS33B-205ENST00000556096 SETD2Q9BYW2 2564 aaPredicted RBP11.24□□□□□ -0.61
VPS33B-205ENST00000556096 NPIPB6E9PJ23 425 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 COX19Q49B96 90 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 COX8CQ7Z4L0 72 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 TSKUQ8WUA8 353 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 UBE2E2Q96LR5 201 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 RPP21Q9H633 154 aaKnown RBP11.23□□□□□ -0.61
VPS33B-205ENST00000556096 IGHV7-4-1A0A0J9YVY3 117 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 RBAKDNA6NC62 111 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 IZUMO1RA6ND01 250 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 P01737 135 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 LGALS1P09382 135 aaKnown RBP11.23□□□□□ -0.61
VPS33B-205ENST00000556096 HLA-DMBP28068 263 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 SAPCD1Q5SSQ6 148 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 C8orf86Q6ZUL3 223 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 GBGT1Q8N5D6 347 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 OR4B1Q8NGF8 309 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 DAZ1Q9NQZ3 744 aaKnown RBP11.23□□□□□ -0.61
VPS33B-205ENST00000556096 TRAPPC1Q9Y5R8 145 aa11.23□□□□□ -0.61
VPS33B-205ENST00000556096 TRAV8-2A0A0B4J237 113 aa11.22□□□□□ -0.61
VPS33B-205ENST00000556096 FABP9Q0Z7S8 132 aa11.22□□□□□ -0.61
VPS33B-205ENST00000556096 SCGB2A2Q13296 93 aa11.22□□□□□ -0.61
VPS33B-205ENST00000556096 IGFL4Q6B9Z1 124 aa11.22□□□□□ -0.61
VPS33B-205ENST00000556096 ZC2HC1AQ96GY0 325 aa11.22□□□□□ -0.61
VPS33B-205ENST00000556096 NF1P21359 2839 aa11.22□□□□□ -0.61
VPS33B-205ENST00000556096 IGKV2-40A0A087WW87 121 aaPredicted RBP11.21□□□□□ -0.61
VPS33B-205ENST00000556096 DNAJC9-AS1A6NH13 148 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 A8MWL6 223 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 CA1P00915 261 aaPredicted RBP11.21□□□□□ -0.61
VPS33B-205ENST00000556096 IGKV2D-40P01614 121 aaPredicted RBP11.21□□□□□ -0.61
VPS33B-205ENST00000556096 HOXA5P20719 270 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 TCL1AP56279 114 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 NDUFA6P56556 154 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 GNB1LQ9BYB4 327 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 NAT8BQ9UHF3 227 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 SMPXQ9UHP9 88 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 UFC1Q9Y3C8 167 aa11.21□□□□□ -0.61
VPS33B-205ENST00000556096 FAM231BA6NCW3 169 aa11.21□□□□□ -0.62
VPS33B-205ENST00000556096 ZNF705FA8MVS1 300 aaPredicted RBP11.21□□□□□ -0.62
VPS33B-205ENST00000556096 GFRA4Q9GZZ7 299 aa11.21□□□□□ -0.62
VPS33B-205ENST00000556096 ESM1Q9NQ30 184 aa11.21□□□□□ -0.62
VPS33B-205ENST00000556096 KRTAP21-3Q3LHN1 58 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 TM4SF20Q53R12 229 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 WDR73Q6P4I2 378 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 RASL11AQ6T310 242 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms