RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 OR4B1Q8NGF8 309 aa20.24■□□□□ 0.83
CCDC88C-205ENST00000553403 NPIPB6E9PJ23 425 aa20.23■□□□□ 0.83
CCDC88C-205ENST00000553403 APOHP02749 345 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-205ENST00000553403 CBLN1P23435 193 aa20.23■□□□□ 0.83
CCDC88C-205ENST00000553403 XKRY2A2RUG3 117 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 A8MWL6 223 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 ZNF207O43670 478 aaKnown RBP20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 IGHV3-11P01762 117 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 PSMB8P28062 276 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 RASL11AQ6T310 242 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 C16orf54Q6UWD8 224 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 FOXC2Q99958 501 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 MRPL18Q9H0U6 180 aaKnown RBP20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 CHEK1O14757 476 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 TMEM95Q3KNT9 176 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 WFDC11Q8NEX6 87 aa20.22■□□□□ 0.83
CCDC88C-205ENST00000553403 IGHV3-66A0A0C4DH42 116 aa20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 IFITM10A6NMD0 228 aa20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 SNURFLB1AK76 121 aa20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 NUP35Q8NFH5 326 aa20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 WIPF2Q8TF74 440 aaPredicted RBP20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 GFRA4Q9GZZ7 299 aa20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 CELSR1Q9NYQ6 3014 aa20.21■□□□□ 0.83
CCDC88C-205ENST00000553403 HOXA3O43365 443 aaPredicted RBP20.2■□□□□ 0.82
CCDC88C-205ENST00000553403 GFI1BQ5VTD9 330 aa20.2■□□□□ 0.82
CCDC88C-205ENST00000553403 ZC2HC1AQ96GY0 325 aa20.2■□□□□ 0.82
CCDC88C-205ENST00000553403 NEU1Q99519 415 aa20.2■□□□□ 0.82
CCDC88C-205ENST00000553403 NPFFR1Q9GZQ6 430 aa20.2■□□□□ 0.82
CCDC88C-205ENST00000553403 FAM231BA6NCW3 169 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 FRMD6-AS1P0C7T7 363 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 LCN12Q6JVE5 192 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 TMEM136Q6ZRR5 245 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 COX8CQ7Z4L0 72 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 GLMPQ8WWB7 406 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 SPINK4O60575 86 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 SAPCD1Q5SSQ6 148 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 MRPL54Q6P161 138 aaKnown RBP20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 UNQ9165/PRO28630Q6UXU0 137 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 LCNL1Q6ZST4 164 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 MRPL53Q96EL3 112 aaKnown RBP20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 ZNF702PQ9H963 129 aa20.19■□□□□ 0.82
CCDC88C-205ENST00000553403 IGHV3OR16-13A0A075B7E8 117 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 IGKV2-40A0A087WW87 121 aaPredicted RBP20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 IGHV3-49A0A0A0MS15 119 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 IGHV3-74A0A0B4J1X5 117 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 IGKV2D-40P01614 121 aaPredicted RBP20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 SLC35B1P78383 322 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 ATP5L2Q7Z4Y8 100 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 GPR61Q9BZJ8 451 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 PEF1Q9UBV8 284 aaKnown RBP20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 F8P00451 2351 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 CSPG4Q6UVK1 2322 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 SVEP1Q4LDE5 3571 aa20.18■□□□□ 0.82
CCDC88C-205ENST00000553403 HIGD1CA8MV81 97 aa20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 HLA-DQA1P01909 254 aa20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 SMIM6P0DI80 62 aa20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 HLA-DMBP28068 263 aa20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 S100A2P29034 98 aa20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 CLEC5AQ9NY25 188 aa20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 TEP1Q99973 2627 aaKnown RBP20.17■□□□□ 0.82
CCDC88C-205ENST00000553403 RBAKDNA6NC62 111 aa20.16■□□□□ 0.82
CCDC88C-205ENST00000553403 IGFL4Q6B9Z1 124 aa20.16■□□□□ 0.82
CCDC88C-205ENST00000553403 Q71RC1 249 aaPredicted RBP20.16■□□□□ 0.82
CCDC88C-205ENST00000553403 A0A1W2PS18 150 aa20.16■□□□□ 0.82
CCDC88C-205ENST00000553403 C12orf57Q99622 126 aa20.16■□□□□ 0.82
CCDC88C-205ENST00000553403 CT45A10P0DMU9 189 aa20.15■□□□□ 0.82
CCDC88C-205ENST00000553403 OR2D3Q8NGH3 330 aa20.15■□□□□ 0.82
CCDC88C-205ENST00000553403 HIVEP1P15822 2718 aa20.14■□□□□ 0.82
CCDC88C-205ENST00000553403 FOXE3Q13461 319 aa20.14■□□□□ 0.81
CCDC88C-205ENST00000553403 C8orf86Q6ZUL3 223 aa20.14■□□□□ 0.81
CCDC88C-205ENST00000553403 TCF24Q7RTU0 167 aa20.14■□□□□ 0.81
CCDC88C-205ENST00000553403 PRR25Q96S07 402 aa20.14■□□□□ 0.81
CCDC88C-205ENST00000553403 TRAV8-2A0A0B4J237 113 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 ZNF705FA8MVS1 300 aaPredicted RBP20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 ELANEP08246 267 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 CRIP1P50238 77 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 PDZD11Q5EBL8 140 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 TMEM86BQ8N661 226 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 C8orf49Q96NF6 230 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 VGLL1Q99990 258 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 SMAD7O15105 426 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 PRB4P10163 310 aaPredicted RBP20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 RBPMS2Q6ZRY4 209 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 Q8N2B8 174 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 SIGLECL1Q8N7X8 197 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 GTSF1Q8WW33 167 aa20.13■□□□□ 0.81
CCDC88C-205ENST00000553403 A0A1B0GXF2 115 aa20.12■□□□□ 0.81
CCDC88C-205ENST00000553403 K7EMT4 169 aa20.12■□□□□ 0.81
CCDC88C-205ENST00000553403 RAB4BP61018 213 aa20.12■□□□□ 0.81
CCDC88C-205ENST00000553403 ASCL2Q99929 193 aa20.12■□□□□ 0.81
CCDC88C-205ENST00000553403 FOXA3P55318 350 aaPredicted RBP20.11■□□□□ 0.81
CCDC88C-205ENST00000553403 FAM106AQ4KMX7 169 aa20.11■□□□□ 0.81
CCDC88C-205ENST00000553403 GPHB5Q86YW7 130 aa20.11■□□□□ 0.81
CCDC88C-205ENST00000553403 IGHV7-4-1A0A0J9YVY3 117 aa20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 RNF182Q8N6D2 247 aa20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 MYOZ3Q8TDC0 251 aa20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 HIST1H2BLQ99880 126 aa20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 NDFIP1Q9BT67 221 aa20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 CRISP2P16562 243 aa20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 C10orf99Q6UWK7 81 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms