RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TIMM8BQ9Y5J9 83 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-216ENST00000552909 SOX21Q9Y651 276 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-216ENST00000552909 C8orf88P0DMB2 117 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 CD24P25063 80 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 UBE2L3P68036 154 aaKnown RBP6.07□□□□□ -1.44
LIMA1-216ENST00000552909 SAMD5Q5TGI4 173 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 CCDC144NLQ6NUI1 221 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 TEX45Q8NA69 505 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 OR4X2Q8NGF9 303 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 OR13A1Q8NGR1 328 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 RFESDQ8TAC1 157 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 SPATA25Q9BR10 227 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 INSIG2Q9Y5U4 225 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 FNDC10F2Z333 226 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 SIVA1O15304 175 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 GPR12P47775 334 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 BOD1L2Q8IYS8 172 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 STXBP6Q8NFX7 210 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 MRAP2Q96G30 205 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 NDFIP1Q9BT67 221 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 ENY2Q9NPA8 101 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 KAAG1Q9UBP8 84 aa6.07□□□□□ -1.44
LIMA1-216ENST00000552909 TRAV3A0A0B4J244 114 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 TEX50A0A1B0GTY4 177 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 K7EQM0 130 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 PEX7O00628 323 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 CHEK1O14757 476 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 SMIM13P0DJ93 91 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 ZNF138P52744 262 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 PAX8Q06710 450 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 KLF17Q5JT82 389 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-216ENST00000552909 ADAMTSL5Q6ZMM2 481 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 FOXI2Q6ZQN5 318 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 VKORC1L1Q8N0U8 176 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 PIP4P2Q8N4L2 257 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 MDFIQ99750 246 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 ZNF747Q9BV97 191 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 FAM234AQ9H0X4 552 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 TMEM140Q9NV12 185 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 IGHV3OR16-10A0A075B7F0 116 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 IGHV3-43A0A0B4J1X8 118 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 A6NJY4 79 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 J3QLI3 93 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 NDUFB3O43676 98 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 IGHV3-43DP0DP04 118 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 GATA3P23771 443 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 ZNF137PP52743 207 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 LTC4SQ16873 150 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 KRTAP21-3Q3LHN1 58 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 MTURNQ8N3F0 131 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 BLNKQ8WV28 456 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 SLC25A33Q9BSK2 321 aa6.06□□□□□ -1.44
LIMA1-216ENST00000552909 MRPL32Q9BYC8 188 aaKnown RBP6.06□□□□□ -1.44
LIMA1-216ENST00000552909 RPP21Q9H633 154 aaKnown RBP6.06□□□□□ -1.44
LIMA1-216ENST00000552909 C15orf61A6NNL5 157 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 A8MWL6 223 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 SPINT2O43291 252 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 NCR2O95944 276 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 FSHBP01225 129 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 IGHV3-7P01780 117 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 CSN3P07498 182 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 IGHV4-38-2P0DP08 117 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 CSN1S1P47710 185 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 DLX1P56177 255 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 PRB3Q04118 309 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-216ENST00000552909 CT83Q5H943 113 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 ZNF329Q86UD4 541 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 PGLYRP4Q96LB8 373 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 GEMIN7Q9H840 131 aaKnown RBP6.05□□□□□ -1.44
LIMA1-216ENST00000552909 SPANXB1Q9NS25 103 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-216ENST00000552909 AP5S1Q9NUS5 200 aa6.05□□□□□ -1.44
LIMA1-216ENST00000552909 FBLL1A6NHQ2 334 aaKnown RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 C15orf65H3BRN8 121 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 FCGR2BP31994 310 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 RBPMS2Q6ZRY4 209 aaKnown RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 BCL6BQ8N143 479 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 TMEM116Q8NCL8 245 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 VGLL1Q99990 258 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 SLC25A2Q9BXI2 301 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 RPUSD1Q9UJJ7 312 aaKnown RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 F8W1H4 67 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 P01737 135 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 APOHP02749 345 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 CGB3P0DN86 165 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 CGB7P0DN87 165 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 HSPE1P61604 102 aaKnown RBP6.04□□□□□ -1.44
LIMA1-216ENST00000552909 C17orf58Q2M2W7 97 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 TMEM200BQ69YZ2 307 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 GTSF1Q8WW33 167 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 FAM167A-AS1Q96KT0 104 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 S1PR3Q99500 378 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 GFRA4Q9GZZ7 299 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 CALYQ9NYX4 217 aa6.04□□□□□ -1.44
LIMA1-216ENST00000552909 DSCAML1Q8TD84 2053 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 IGKV1OR2-108A0A075B7D4 117 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 TRAV5A0A0B4J249 113 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 TRAV40A0A0B4J280 105 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 KBTBD11-OT1A0A1B0GTJ5 212 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 SERTM2A0A1B0GWG4 89 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 hADV38S2A0JD32 116 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms