RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 KCNIP2Q9NS61 270 aa2.36□□□□□ -2.03
LIMA1-208ENST00000551691 FKBP14Q9NWM8 211 aa2.36□□□□□ -2.03
LIMA1-208ENST00000551691 RASL12Q9NYN1 266 aa2.36□□□□□ -2.03
LIMA1-208ENST00000551691 ATPIF1Q9UII2 106 aa2.36□□□□□ -2.03
LIMA1-208ENST00000551691 RAB26Q9ULW5 256 aa2.36□□□□□ -2.03
LIMA1-208ENST00000551691 IGLV4-60A0A075B6I1 120 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 IGKV2D-24A0A075B6R9 120 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 DEFB131BA0A096LNP1 70 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 TRAV10A0A0B4J240 114 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 IGKV1-6A0A0C4DH72 117 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 TEX50A0A1B0GTY4 177 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 A6NIN4 97 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 OOSP1A8MZH6 123 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 H3BQF6 201 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 CDC42EP2O14613 210 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 MYL12AP19105 171 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 SERPINB9P50453 376 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 H2BFSP57053 126 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 AP3S2P59780 193 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 CDK6Q00534 326 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 AESQ08117 197 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 GRK1Q15835 563 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 C12orf74Q32Q52 190 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 ACSM3Q53FZ2 586 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 LINC00483Q53H64 154 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF660Q6AZW8 331 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-208ENST00000551691 LAIR2Q6ISS4 152 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 TBPL2Q6SJ96 375 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 HEPN1Q6WQI6 88 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 FAM19A5Q7Z5A7 132 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-208ENST00000551691 DAZ4Q86SG3 579 aaKnown RBP2.35□□□□□ -2.03
LIMA1-208ENST00000551691 C4orf33Q8N1A6 199 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 MIR7-3HGQ8N6C7 128 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 OR2T10Q8NGZ9 312 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 OR4A5Q8NH83 315 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 SRSF12Q8WXF0 261 aaKnown RBP2.35□□□□□ -2.03
LIMA1-208ENST00000551691 SPTSSAQ969W0 71 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 GALMQ96C23 342 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 NMNAT1Q9HAN9 279 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-208ENST00000551691 DAZ1Q9NQZ3 744 aaKnown RBP2.35□□□□□ -2.03
LIMA1-208ENST00000551691 IL20Q9NYY1 176 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 SNX12Q9UMY4 172 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 IER3IP1Q9Y5U9 82 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 RFNGQ9Y644 331 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 LINC00312Q9Y6C7 94 aa2.35□□□□□ -2.03
LIMA1-208ENST00000551691 NBDYA0A0U1RRE5 68 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 A8MU10 97 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 C8orf87E5RJ46 101 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 MFNGO00587 321 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF207O43670 478 aaKnown RBP2.34□□□□□ -2.03
LIMA1-208ENST00000551691 TRGV3P03979 118 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 CD14P08571 375 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 ORM2P19652 201 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 GNG3P63215 75 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 KRR1Q13601 381 aaKnown RBP2.34□□□□□ -2.03
LIMA1-208ENST00000551691 BATFQ16520 125 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 SMIM21Q3B7S5 101 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 AKIRIN2Q53H80 203 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 ZNF880Q6PDB4 577 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 CD200R1LQ6Q8B3 271 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 FAM131AQ6UXB0 335 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 TMEM144Q7Z5S9 345 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 GID4Q8IVV7 300 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 MSRB3Q8IXL7 192 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 HS3ST5Q8IZT8 346 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 SLC35G3Q8N808 338 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 FER1L6-AS1Q8NA97 138 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 DYNLRB2Q8TF09 96 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 DEFB104AQ8WTQ1 72 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 TNFAIP8L1Q8WVP5 186 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 NMNAT3Q96T66 252 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 PARD6GQ9BYG4 376 aaPredicted RBP2.34□□□□□ -2.03
LIMA1-208ENST00000551691 MED31Q9Y3C7 131 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 TRAPPC1Q9Y5R8 145 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 MPC1Q9Y5U8 109 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 NUBP2Q9Y5Y2 271 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 ALG5Q9Y673 324 aa2.34□□□□□ -2.03
LIMA1-208ENST00000551691 C2orf70A6NJV1 201 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 IL6P05231 212 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 OR5AC1P0C628 307 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 DNAH10OSP0CZ25 163 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 MT1HL1P0DM35 61 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 CGB3P0DN86 165 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 CGB7P0DN87 165 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 PTHLHP12272 177 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 NTF3P20783 257 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 PHBP35232 272 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 PPP1CCP36873 323 aaKnown RBP2.33□□□□□ -2.04
LIMA1-208ENST00000551691 INPP1P49441 399 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 PSMB3P49720 205 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 TAS2R41P59536 307 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 ZNF816Q0VGE8 651 aaPredicted RBP2.33□□□□□ -2.04
LIMA1-208ENST00000551691 RSU1Q15404 277 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 SP6Q3SY56 376 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 FAM104BQ5XKR9 115 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 UNQ5815/PRO19632Q6UWF5 114 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 UNQ9165/PRO28630Q6UXU0 137 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 ATP5L2Q7Z4Y8 100 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 FAM19A3Q7Z5A8 133 aa2.33□□□□□ -2.04
LIMA1-208ENST00000551691 AMN1Q8IY45 258 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms